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Domain assignment for WP_011788448.1.82224 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_011788448.1.82224
Domain Number 1 Region: 3-143
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 4.2e-50
Family Ribonuclease PH domain 1-like 0.0000205
Further Details:      
 
Domain Number 2 Region: 292-487
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 2.43e-46
Family Ribonuclease PH domain 1-like 0.0000128
Further Details:      
 
Domain Number 3 Region: 144-235
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.4e-28
Family Ribonuclease PH domain 2-like 0.00086
Further Details:      
 
Domain Number 4 Region: 449-547
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 1.25e-27
Family Ribonuclease PH domain 2-like 0.00011
Further Details:      
 
Domain Number 5 Region: 553-639
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 2.58e-22
Family Eukaryotic type KH-domain (KH-domain type I) 0.004
Further Details:      
 
Domain Number 6 Region: 619-696
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.11e-21
Family Cold shock DNA-binding domain-like 0.0001
Further Details:      
 
Domain Number 7 Region: 238-319
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 7.06e-17
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) WP_011788448.1.82224
Sequence length 699
Comment MULTISPECIES: polyribonucleotide nucleotidyltransferase [Shewanella]; AA=GCF_000016585.1; RF=na; TAX=319224; STAX=24; NAME=Shewanella putrefaciens CN-32; strain=CN-32; AL=Complete Genome; RT=Major
Sequence
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVAQIETSQLNLVVAG
TASAVLMVESEAQALPEEVMLGSVVYGHDQQQVVINAIAEFKAEAGKPMWDWTAPVQDET
LVAQIKELAEAGLGDAYKIQVKQDRYAQVAVVKAATKEALLASNPNIDLREVDNLLGSLE
KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRGGITALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVRIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKEAAAE
Download sequence
Identical sequences A1RGY0 A4Y9B5 E6XJ81
319224.Sputcn32_2829 351745.Sputw3181_1075 gi|120597905|ref|YP_962479.1| gi|386314675|ref|YP_006010840.1| gi|146293923|ref|YP_001184347.1| WP_011788448.1.65999 WP_011788448.1.82224 WP_011788448.1.85280 WP_011788448.1.98421

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