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Domain assignment for WP_012179658.1.38649 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_012179658.1.38649
Domain Number 1 Region: 2-144
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.37e-49
Family Ribonuclease PH domain 1-like 0.000023
Further Details:      
 
Domain Number 2 Region: 299-492
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.72e-45
Family Ribonuclease PH domain 1-like 0.0000151
Further Details:      
 
Domain Number 3 Region: 456-564
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 3.93e-28
Family Ribonuclease PH domain 2-like 0.00011
Further Details:      
 
Domain Number 4 Region: 145-241
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 5.61e-26
Family Ribonuclease PH domain 2-like 0.0024
Further Details:      
 
Domain Number 5 Region: 558-644
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.39e-23
Family Eukaryotic type KH-domain (KH-domain type I) 0.0025
Further Details:      
 
Domain Number 6 Region: 624-708
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 4.32e-23
Family Cold shock DNA-binding domain-like 0.00048
Further Details:      
 
Domain Number 7 Region: 245-323
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.00000000000000366
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_012179658.1.38649
Sequence length 711
Comment polyribonucleotide nucleotidyltransferase [Dinoroseobacter shibae]; AA=GCF_000018145.1; RF=representative genome; TAX=398580; STAX=215813; NAME=Dinoroseobacter shibae DFL 12 = DSM 16493; strain=DFL 12; AL=Complete Genome; RT=Major
Sequence
MFNQVKKTMEWGEDTLTLETGKIARQADGCVIATYGETSVMAAVTYARSQKPGQDFFPLT
VHYNEKYYAAGKIPGGFFKREARPTEKETLTSRLIDRPIRPLFVDGFKNEVLVICTVLSH
DLENDPDIVAMIAASAALTISGVPFMGPIAGARVGYEDGEYVLNPVVDDMHDLRNNPDQR
LDLVVAGTKDAVMMVESEAYELSEAEMLGAVKFGHEQMQPVIDLIIELAETAAKEPFDFQ
PADYSELYAKVKAAGEDQMRAAFAITDKQERVTAISAARDAILATLSDEEQTDPNLGSAL
KKLESSILRGDVVKNGRRIDGRALDTVRPIQSEVGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEEDGSYA
VLTDILGDEDHLGDMDFKVAGTEEGITSLQMDIKVAGITPEIMEKALEQAKAGRLHILGE
MSKALSEGRSQFSEHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGIIK
IASANGEAIKKAYEMIHSIVAEPEEGKVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIEN
RRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIKKEAPAD
Download sequence
Identical sequences A8LKE7
398580.Dshi_2997 gi|159045537|ref|YP_001534331.1| WP_012179658.1.38649

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