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Domain assignment for WP_012419436.1.65144 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_012419436.1.65144
Domain Number 1 Region: 296-469
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 7.09e-44
Family Ribonuclease PH domain 1-like 0.0000121
Further Details:      
 
Domain Number 2 Region: 3-143
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.52e-42
Family Ribonuclease PH domain 1-like 0.0000396
Further Details:      
 
Domain Number 3 Region: 144-234
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 7.33e-27
Family Ribonuclease PH domain 2-like 0.001
Further Details:      
 
Domain Number 4 Region: 451-552
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 9.42e-21
Family Ribonuclease PH domain 2-like 0.00014
Further Details:      
 
Domain Number 5 Region: 561-646
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 2.84e-18
Family Eukaryotic type KH-domain (KH-domain type I) 0.0026
Further Details:      
 
Domain Number 6 Region: 626-708
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.17e-17
Family Cold shock DNA-binding domain-like 0.00067
Further Details:      
 
Domain Number 7 Region: 239-319
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0000000000128
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_012419436.1.65144
Sequence length 714
Comment polyribonucleotide nucleotidyltransferase [Akkermansia muciniphila]; AA=GCF_900185025.1; RF=na; TAX=239935; STAX=239935; NAME=Akkermansia muciniphila; AL=Scaffold; RT=Major
Sequence
MSIHSVECNVGTNPITIETGKMARLADGAVVVRSGDTVVLVTVVSATKVKEGQTFFPLSV
EYKEKAAAAGMFPGGYFKREGRPTEKEILTCRMTDRPLRPMFPKGYFYDTQVITLLLSAD
GENEPDILSINGASAACVVSDLPFAEPVGAVRVGRIDGQFVINPTNSQREHSQLDLVFAG
TKDQVIMIEGSANELPEEDFIAALRVAQENVKVICEKQEELRAVCGKEKRAYELCLAKPE
LLEIGYEIAGDRIEEAIYAPSKVERQKKVGALRDEVEAAIKERHPEATDFDVEQVFEYIQ
KKAFRISIMEKDKRADGRALKQLRPLTAEVNVLPPVVHGSAMFARGETMSLCLATLAPME
ERQYMDNYTGSVNEKRFILHYNFPPFSVGDTGRFGGQNRREIGHGALAERSIAPVVPGEQ
EFPYAIRVSSEIMESNGSTSMASVCAGTMSLLAAGVPLKRPVAGISVGLVTEQNDQHEIT
SYKTLLDIIGSEDFYGDMDFKLCGTSEGVTGYQLDLKLPGIPLSILEEAIHVAKAGRTDV
LKVMNEAIAAPAQMSPNAPRIETTKIPADRIGELIGPGGKNIKAIQAESGADINIEEDGT
VHIYAAKQEGLDRALELVTRMFKTIEIGELYTGKIVSTTTFGAFMEVLPGKDGLIHISEL
AEGRTAKTEDVVSVGDVVTAKCIGIDDKGRVKMSIRAALRDAKAAEAEAAGITE
Download sequence
Identical sequences A0A1Q6UPZ9 B2UNA9
gi|187734890|ref|YP_001877002.1| 349741.Amuc_0382 WP_012419436.1.11081 WP_012419436.1.13503 WP_012419436.1.26090 WP_012419436.1.31314 WP_012419436.1.44559 WP_012419436.1.48500 WP_012419436.1.52179 WP_012419436.1.55880 WP_012419436.1.65144 WP_012419436.1.67314 WP_012419436.1.86927

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