SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_012935831.1.44340 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_012935831.1.44340
Domain Number 1 Region: 90-220
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 3.4e-24
Family GntR ligand-binding domain-like 0.01
Further Details:      
 
Domain Number 2 Region: 17-106
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 6.31e-17
Family GntR-like transcriptional regulators 0.074
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_012935831.1.44340
Sequence length 244
Comment GntR family transcriptional regulator [Conexibacter woesei]; AA=GCF_000025265.1; RF=representative genome; TAX=469383; STAX=191495; NAME=Conexibacter woesei DSM 14684; strain=DSM 14684; AL=Complete Genome; RT=Major
Sequence
MSPQPTSPKTGVSVIARSETLAQRAYEALRQAIRTGSMEHERVYSESELAQSMGVSRTPV
REALLELSRDGLVEILPQRGFRLRSLSHAEREEIYGLRMALEGYVVERLAMRGDPQHVAA
LRQLLDGQRRVLEEDPAGFLTIDEQFHLLMPELLQLARAHQMLVTLRGAMWLTGSLALSI
GERAPHVLEEHTAIVDAIAARDPRAARRAIREHLDASLQAVELELELEANAAGGQTERSQ
PAST
Download sequence
Identical sequences D3F6Y2
gi|284045815|ref|YP_003396155.1| WP_012935831.1.44340

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]