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Domain assignment for WP_013371001.1.91857 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  WP_013371001.1.91857
Domain Number 1 Region: 919-1009
Classification Level Classification E-value
Superfamily E set domains 5.6e-20
Family E-set domains of sugar-utilizing enzymes 0.015
Further Details:      
 
Domain Number 2 Region: 821-916
Classification Level Classification E-value
Superfamily E set domains 6.02e-20
Family E-set domains of sugar-utilizing enzymes 0.012
Further Details:      
 
Domain Number 3 Region: 56-175,211-248,282-343
Classification Level Classification E-value
Superfamily Class I glutamine amidotransferase-like 0.000000000174
Family STM3548-like 0.014
Further Details:      
 
Domain Number 4 Region: 727-810
Classification Level Classification E-value
Superfamily Invasin/intimin cell-adhesion fragments 0.00000589
Family Invasin/intimin cell-adhesion fragments 0.011
Further Details:      
 
Weak hits

Sequence:  WP_013371001.1.91857
Domain Number - Region: 537-600
Classification Level Classification E-value
Superfamily Hypothetical protein YgiW 0.000196
Family Hypothetical protein YgiW 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) WP_013371001.1.91857
Sequence length 1011
Comment nucleic acid-binding ob-fold tRNA/helicase-type [Paenibacillus polymyxa]; AA=GCF_000237325.1; RF=na; TAX=1052684; STAX=1406; NAME=Paenibacillus polymyxa M1; strain=M1; AL=Complete Genome; RT=Major
Sequence
MGIFRRFTSRSFKYATAMVFTLSLYAGVVGGIQPARAEGPADPAPFIAAKVVNENAGKKV
LFDNTHGQTAGAADWVIDGGFSDFGQALANNGYDVHELRQSTPITYNDLKNYDVFVTAEP
NIPFKQSEQAAMEQYVKAGNSIFFIGDHYNADRNKNRWDGSESINGYRRGAWEDPAKGMS
EEEKSSTAMQGVVNSDWLGSQFGIRFRYNALGDITANQIVEPAQAFGITAGVSNVAMHAG
STLAIIDPTKAKGIVYLPKTNQAWGNAVDQGVYNGGGIAEGPYAAVAKVGLGKAAFIGDS
SPVEDATPKYLREETGTKKTTYDGFKEQDDAVLLVNMVDWLSKKEEYTSLSDVKNLHLDQ
PTALLSFEDPQASTEPQAEPWSAPAAGYKWWDQRTFKAGSYGGSTASAQPVYSIVRQEQL
PNAQPFQIRIVADQLAPNSTISGFSAGIYVAGGNQVAQIQNPDGSWPTSYGYSGTFSLES
DSKGHAYRDLTVRIKPGTSGSANLRLRQNGSNLLTQSVVLADVPAQPLPEDGNTIPARIS
VAEARTLSAGKVVTLEGVVTTEPGAFGGQAFYMQDESGGIYVYQNQSGFHPGDRVKITAS
LALYNSEVELTDPVAIEKTGEGQLPQAVQVTELNDANQGQLVELPTAIIRNVIDATPVGS
FEFDAVAGEVSHHVRIDARTGLTRTSFPYQEGQQVKLKGISAVFKGNYQLKPRGLDDFSA
QTDATLQEVELSLDQTTFNVGDTTVTHLKGMLTDGSQADLSNASVQYSSSHESVALDTYG
ELRALKEGSAEITASVTLDGKTVVSNPVTVRVEKTAAGEVPGKPVLSHDNGQDTGLKDGD
YNITMNLWWGTNGDELKWYENDKLIETQSLHAASPGAQHAVISVTGKSNGTYTYTAELIN
ASGKTVSDPLTVEVTDASPGIPVLSHNNWDGNGDYTLTMNMWWGTNATQYNLYENGKLID
TQDLSSQSPQAQSAATNIQNQKPGTYEYRAELVNAAGEVSSQTISVEVKER
Download sequence
Identical sequences E3EJA9
gi|310641879|ref|YP_003946637.1| WP_013371001.1.14980 WP_013371001.1.91857 gi|386040874|ref|YP_005959828.1|

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