SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for WP_015123978.1.5248 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  WP_015123978.1.5248
Domain Number 1 Region: 72-155,185-320
Classification Level Classification E-value
Superfamily Pectin lyase-like 6.28e-17
Family Pectin methylesterase 0.031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) WP_015123978.1.5248
Sequence length 380
Comment hypothetical protein [Synechococcus sp. PCC 6312]; AA=GCF_000316685.1; RF=na; TAX=195253; STAX=195253; NAME=Synechococcus sp. PCC 6312; strain=PCC 6312; AL=Complete Genome; RT=Major
Sequence
MVVKQVRNAIFAGLSGAVVIMAFANNLHDVAQRWWPNPFQDSLSPDTNPHLNAIAQAADT
PPNPNLLDRLQALTSTPTFYVAADGTDQSDGTANAPFPTLSQAITAVTAAQAKEPQAQFI
IQLAAGTYGDANTSEPLLIPPGVTLKGQGTATTVKQSLQLSHNSRVEQLVLNETGILIRP
QENATGEVSVEQVSITRGFLTIKAAGPLPTPKIQVKHVTMADSCILVSGVAKPEIRDVQM
RGNVGVDDFSLAHCSENGLLASGDTMPLIQLLGAATLENILVSNTNLAIFNQSEGSVIKN
LRIVNSLNGIENRGNLSLDGPNLENVSYTGICNHGSLTLQRPGFDPTTAITTPQCLVPGL
DQPPPSPINLAGNLDTIKVN
Download sequence
Identical sequences K9RT25
WP_015123978.1.5248 gi|427712353|ref|YP_007060977.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]