SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_001745975.1.20067 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_001745975.1.20067
Domain Number 1 Region: 79-189
Classification Level Classification E-value
Superfamily Collagen-binding domain 0.00000301
Family Collagen-binding domain 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_001745975.1.20067
Sequence length 318
Comment hypothetical protein [Monosiga brevicollis MX1]; AA=GCF_000002865.3; RF=representative genome; TAX=431895; STAX=81824; NAME=Monosiga brevicollis MX1; strain=MX1; AL=Scaffold; RT=Major
Sequence
MMRLALALVLLAASTAGVPLQRREASPSPVTIDASGDSQLLASTVAPTTTTTTTTTTTTT
TTTTTTTTSTVHMCAQDDAYEPNDTYNWAAILPIPSVSNLRLCDTGDYFRITVCNGATVS
VHLTFNSSNGDLDMAIYDSPNGVLLDSSATSGNEESITFVNDSPGVGTTEFVIRVLSLSN
HINAYTLNVSLDDECNEPTTVVPTTTELEITTPDLSTPVCPDNFIIRTYARDRTFDVTFT
VSCPYGHIVRFCNDRDDDAVELILFDDQVVASDYTHLQYYVPPEVAIEGKHYSLLVWSSR
RTAIEIYGHLLISECVTQ
Download sequence
Identical sequences A9UZN7
jgi|Monbr1|25524|fgenesh2_pg.scaffold_10000174 XP_001745975.1.20067 81824.JGI25524

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]