SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_002422972.1.24195 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_002422972.1.24195
Domain Number 1 Region: 121-281
Classification Level Classification E-value
Superfamily Concanavalin A-like lectins/glucanases 3.91e-22
Family Pentraxin (pentaxin) 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_002422972.1.24195
Sequence length 850
Comment pentraxin, putative [Pediculus humanus corporis]; AA=GCF_000006295.1; RF=representative genome; TAX=121224; STAX=121225; NAME=Pediculus humanus corporis; strain=USDA; AL=Scaffold; RT=Major
Sequence
MKSKKGNNNNNNININISNNNNSINGKFLWQFFILVSVLITLTDGIRVYEGTNFEPPQKI
KPEKTGLSKKSLYISKRSWNPSDDGYGGKLQVGHGKNDKWKNLSNGKKTNGQNDFPTLYK
IIFNEKNSRQYVKYIKEIPRLEEYTFCMWYKPLDLSHNHVLFSYSMNKKENLLKFWINSN
DSTLRMAIRENLVYKVPGHIRKNKWHHICQSWNGLLGEWQIFLDGKRIGRGILPMYKETY
IPEKGDVVLGQEYNINSEKNAVVEYEGITGEIFGFNLVDESVPGEQGNFINSQYKPNIIR
SSVLPFKKLPLMKKNYQQIKAYISKLPNHPPEKVKNGDGSRERGDNRHGSKRTRDPMVGP
KRYRGPPRHRFPPSRKVIMYGNNRESKNLKIELGKNETIGIENENFDDVIDGETSTEEEI
IVETATDGDVIDNDARKKQIYDENYSIHSYRLGKDGKKSTNYEIYESVEDDEAMKPTENE
SGPLALERKARKNFDLFTAREANKVYTLSNAVRDSKKPKYHFEINPYVDERQKKNIIFDK
ETPTLTVSTSHDETTKRTERKPSDPIPVYETEVVLLRQKRNPGDSVLTEGFRHLPDIPDS
FINVFIKNGSKMEIQEKIDEFFPTNVTATENSNVVFLSKVSTTAPAPAVGSLLSSSTSKP
ITRSNPTAATATEKPKVISHQLYQIPVAVVPLVPLQTSQILNPPYLPQTPPVHFQPIAPE
HVPEVPFIKLPPTPSETDFFDVDPQQKLSERNYGNQEQEEEEEQEEGEGEISMGGYEMTT
TSATPIQSAGKKFDVTSGTELIMRAYGLCTNNRGSPVSDRNHIVISWSETPMRIFGGAEV
VIAKNECGNF
Download sequence
Identical sequences E0VA28
121224.XP_002422972 vb|PHUM025790-PA|EEB10234.1|pentraxin XP_002422972.1.24195

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]