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Domain assignment for XP_003123618.1.46622 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_003123618.1.46622
Domain Number 1 Region: 292-384
Classification Level Classification E-value
Superfamily Immunoglobulin 2.26e-18
Family I set domains 0.093
Further Details:      
 
Domain Number 2 Region: 143-196
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000000222
Family TSP-1 type 1 repeat 0.001
Further Details:      
 
Domain Number 3 Region: 213-286
Classification Level Classification E-value
Superfamily Carboxypeptidase regulatory domain-like 0.0000049
Family Carboxypeptidase regulatory domain 0.048
Further Details:      
 
Weak hits

Sequence:  XP_003123618.1.46622
Domain Number - Region: 474-537
Classification Level Classification E-value
Superfamily Carboxypeptidase regulatory domain-like 0.000216
Family Carboxypeptidase regulatory domain 0.036
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_003123618.1.46622
Sequence length 1157
Comment cartilage intermediate layer protein 2 isoform X1 [Sus scrofa]; AA=GCF_000003025.6; RF=representative genome; TAX=9823; STAX=9823; NAME=Sus scrofa; breed=Duroc; AL=Chromosome; RT=Major
Sequence
MASLPTLLCLCVAAAHLAGARGTTTPEEPTATAWDLEGPSLRPGQPSPALEDWEEASEWT
SWFNVDHPGGDGDFESLAAIRFYYGPARVCPRPLALEARTTDWALPSDVGERVHLNPTRG
FWCLNREQPRGRRCSNYHVRFRCPLEATWGAWGPWGPCSGSCGPGRRLRRRRCPSSAGDA
CPGRPLEAQKCIRSPCPGCSLNICGCPDHILLGSVVTPTGRPLPGARVSLRDWPGTVATS
NAHGTFRMPGVCASSRVNVSAQMDGFSAGMAQAQANSSISAVVTVVLKKLEKPYLVKQPE
SRVREAGQNVTFCCKASGTPIPKKYSWFHNGTLLDRRTHRYGAHLELHGLHPDQAGTYHC
KAWNDAGAVRSGTARLTVLAPGQPACDPQPREHLIKLPDDCSQPGSGPTYLDVGLCPDTL
CPSATGSSPRCGDAGSRCCSVRRLESRKIRCSGYNLPVKIVAECGCQKCLPRRGLIRGRV
VAADSGEPLRFARILLGREPIGFTSYQGDFTLEVAPSTQRLVITFVDTSGQFVDTVRVLP
FDPRGAGVYHEVKAMRKKAPVILDASQSNTIPLGELEDEAPLGELVIPPGAIRRADGEPY
VGSVEARVTFVDPRDLTSAAAAPSDLRFVDSDGELAPLRTYGMFSVDLRAPDSTEQLQTG
PVAVRVAASQIRMAGHVEALKLWSLNPDTGLWEEESGFQRERSAAQRVRREERVFLVGNV
EIRERRLFNLDVPERRRCFVKVRAYANDKFTPNEQVEGVVVTLVNLEPAPGFSANPRAWG
RFDSAVTGPNGACLPAFCDTDRPDAYTALVTATLGGEELEPATSRPRPLPATVGVAQPYL
DKLGYRRTDHDDPSLKRNGFRINLAKPRSGDPDEANGPVYPWRNLRECQEAPVTANHFRF
ARVEADKYEYNVVPFREGVPASWTGDLLAWWPNPQEFRACFLKVKIQGPQEYMVRSHNAG
GSHPRTQGQLYGLRDARSVRDPERPSMSAACVEFKCGGMLFDQRQVDRTLVTIMPQGSCR
RVAVNGLLQDYLTRHPPPAPADDLAAFSMLAPLDPLGHNYGVYTVTDQSPRLAKEIAIGR
CFDGSSDGFSREMKADAGTAVTFQCREPAAGRPSLFQRLLESPSTALGDIRREMGEVARA
QARASVPLRTRRGRARQ
Download sequence
Identical sequences F1S6Q3
XP_003123618.1.46622 9823.ENSSSCP00000014814 ENSSSCP00000014814 ENSSSCP00000014814

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