SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_003486089.1.29386 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_003486089.1.29386
Domain Number 1 Region: 158-466
Classification Level Classification E-value
Superfamily Glycoside hydrolase/deacetylase 6.67e-39
Family NodB-like polysaccharide deacetylase 0.016
Further Details:      
 
Domain Number 2 Region: 55-96
Classification Level Classification E-value
Superfamily Invertebrate chitin-binding proteins 0.00000000167
Family Tachycitin 0.018
Further Details:      
 
Domain Number 3 Region: 110-149
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000563
Family LDL receptor-like module 0.0017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_003486089.1.29386
Sequence length 532
Comment PREDICTED: uncharacterized protein LOC100743732 isoform X1 [Bombus impatiens]; AA=GCF_000188095.1; RF=representative genome; TAX=132113; STAX=132113; NAME=Bombus impatiens; AL=Scaffold; RT=Major
Sequence
MRSSLVLLFLAAIVLAEGSNRVKRQEEKKEESFESEICKDKDAGEWFRLVAGEGDNCRDV
IQCTSSGLQAIRCPAGLYFDIDKQTCDWKDSVNNCKLKNKERKAKPLLYTEEPLCQDGFL
ACGDGSCIERGLFCNGEKDCADGSDENICDMDNDPNRAPPCDPTVCVLPDCFCSEDGTTI
PGDLPPKDVPQMITITFDDAINNNNIGLYKEIFNGKRKNPNGCEIKASFFVSHKYTNYSA
VQEMHRKGHEIAVHSISHNDDERFWSDATVDDWAKEMAGMRIIAEKFANLTDNSVVGVRA
PYLRVGGNNQFTMMEEQAFLYDSTITAALNNPPLWPYTMYFRMPHRCHGNLQHCPTRSHA
VWEMVMNELDRREDPQNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYEQNRAPLGL
YFHAAWLKNNPEFLDAFLYWIDEILSNHNDVYFVTMTQVIQWIQNPRTITESKSFEPWKE
KCIVDGPPACWVPHTCKLTSKEVPGETINLQTCVRCPNNYPWVNDPTGDGFF
Download sequence
Identical sequences XP_003398729.1.43243 XP_003486089.1.29386

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]