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Domain assignment for XP_004997958.1.12839 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_004997958.1.12839
Domain Number 1 Region: 143-278
Classification Level Classification E-value
Superfamily Cadherin-like 1.01e-30
Family Cadherin 0.0012
Further Details:      
 
Domain Number 2 Region: 257-375
Classification Level Classification E-value
Superfamily Cadherin-like 6.85e-23
Family Cadherin 0.0015
Further Details:      
 
Domain Number 3 Region: 58-155
Classification Level Classification E-value
Superfamily Cadherin-like 0.0000000000000914
Family Cadherin 0.0026
Further Details:      
 
Domain Number 4 Region: 474-572
Classification Level Classification E-value
Superfamily Cadherin-like 0.000000171
Family Cadherin 0.0021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_004997958.1.12839
Sequence length 1024
Comment protocadherin gamma B6 [Salpingoeca rosetta]; AA=GCF_000188695.1; RF=representative genome; TAX=946362; STAX=946362; NAME=Salpingoeca rosetta; strain=ATCC 50818; AL=Scaffold; RT=Major
Sequence
MARPLGRALARSPRRRHPSPACTGMLVTAGLLLASLLLGVAVAQNTPPTFQGTPFIELYI
FNVPETNDPTSTVGTVTATDPDAGQTLQYTLSGSGSAAFKIDRNTGVVTSRLPLDADFGT
TTYDDITVSVSDGVDSTTGRILIAITDVNDNSPVFNQDLYTMKVAEDLEADVTFASVEAV
DVDVSTQNSRVTYFIIGGDPDGIFQIATVSGEGRVSVATQLDYERNRTHTLVIEARDGGT
PTRTGNTTLFIEVTDVNDNVPVFSQSLYEVNLPETLRERPARRRRAVGTVLVTISATDDD
TGDNAEVRYSITGGNELGLFALDEVTGDFTLEKPVDFEELTNPVLDITVVATDLGGAVSD
PATIRVTVQDRDDLPVFESDQLPELTIFAGDIGPVGFAPVVDDSRKNTFECRLTTPGTPF
TVAAATSGATGCNIVAQSSTTELGGQMFTLMLEIADQVGVLSRTRVVVNVLPTNRDPPEF
AMDIFDVLLSVATQIDTTVVDLGVTDPDGDAVSCKLLSSPKGLFRIDDCQLVLDSRLPTD
GPTFFDLLVEASDAPTRGNRNLTSTAHVQITLTGVCPSDDASCTCADEGATPPNCTPDLC
EAFPCVNDGVCSQGVSNQGLPERKCMCANFFGGDDWRGGRPTTTTTTTTTTTTTTTTTSP
LATVTFTVPDDDEINDCSQCQNGGTCVRTPTGQVTCDCPRVQQGRFELCYENADCTSQLP
CDQVPFPRGDATGSSTSTPATRPELTCECPRVRQGGVERCYEDARCTNLSPCDEVPFPRG
DASVSTTAAATVTFTVPDQFTVSDCTLCQNGGVCAFTASGQQFCQCPRVPIGSTDFCYEN
FDCTSLQPCDQVDGPNGDRSASTNSTTAVPIAVIVGGAVGGVVMLIIVVVVIVRWRCRSK
RRVAVVKEGPQAYAENPIPVTVRSSGEGDYDVVEAVYPNVNMRETHVGLGGRRPGRRHST
MSDGSDVRGLHQWNATVYDVGHQESDGGRMHAHDWDAGDYDIKNSSPPYETVGKRQQSTP
ASAC
Download sequence
Identical sequences F2TZH8
PTSG_01973T0 XP_004997958.1.12839

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