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Domain assignment for XP_005391140.1.28644 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_005391140.1.28644
Domain Number 1 Region: 329-403
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.000000000196
Family Rhamnogalacturonase B, RhgB, middle domain 0.022
Further Details:      
 
Domain Number 2 Region: 127-202
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.000000126
Family Rhamnogalacturonase B, RhgB, middle domain 0.017
Further Details:      
 
Domain Number 3 Region: 964-1052
Classification Level Classification E-value
Superfamily Carboxypeptidase regulatory domain-like 0.000000471
Family Carboxypeptidase regulatory domain 0.021
Further Details:      
 
Domain Number 4 Region: 883-955
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.00000765
Family Rhamnogalacturonase B, RhgB, middle domain 0.037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_005391140.1.28644
Sequence length 1222
Comment PREDICTED: nodal modulator 1 isoform X1 [Chinchilla lanigera]; AA=GCF_000276665.1; RF=representative genome; TAX=34839; STAX=34839; NAME=Chinchilla lanigera; AL=Scaffold; RT=Major
Sequence
MRAGRSAGPLGPVGVFAAAVLLLSGAGPARGSEDIVVGCGGFVKSDVEINYSLIEIKLYT
KHGTLKYQTDCAPNNGYFMIPLYDKGDFILKIEPPLGWSFEPTSVELYVDGVSDICTKGG
DINFVFTGFSVNGKVLSKGQPLGPAGVQVSLRNTGTEAKIQSTVTQPGGKFAFFKVLPGD
YEILATHPTWALKEASTTVRVTNSNANAAGPLIVAGYNVSGSVRSDGEPMKGVKFLLFSS
VVAKEDVLGCNVSPVPGFQPQDESLVYLCYAVSKEDGSFSFYSLPSGGYTVIPFYRGERI
TFDVAPSRLDFTVEHDSLRIEPVFHVMGFSVTGRVLSGPEGEGVPEAVVTLNSQIKVRTK
TDGSFRLENITTGTYTIHAQKEHLYFETVTIKIAPNTPQLADIIATGFSVCGEVSITRFP
DTAKQMNKYKVVLSSQDKDKSLVTVETDAHGSFCFKAKPGTYKVQVVVPEAETRAGLMLK
PQTFPLTVTDRPVMDVAFVQFLASVSGKVSCLDTCGDLLVTLQSLSRQGEKRSLQLSGKV
NSMTFTFDSVLPGKYKISIMHEDWCWKNKSLEVEVLEDDVSAVEFRQTGYMLRCSLSHAI
TLEFYQDGNGPENVGIYNLSKGVNRFCLSKPGVYKVTPRSCHRFEQAFYTYDTSSPSILT
LTAIRHHVLGTITTDKMMDVTVTIKSSIDSEPALVLGPLKSAQELRREQQLAEIETRRQE
REKNGKEEGGEGRTKPPGQEMVDELQGPFSYDFSYWARSGEKITVTPSSKELLFYPPSME
AVVSGESCPGKLIEIHGKAGLFLEGQIHPELEGVEIVISEKGASSPLITVFTDDKGAYSV
GPLHSDLEYTVTSQKEGYVLTAVEGTVGDFKAYALAGVSFEIKAEDDQPLPGVLLSLSGG
VFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQNLRITITGYRTA
YSCYGTVSSLNGEPEQGVAVEAVGQKDCGIYGEDTVTDEEGKFRLRGLLPGCVYHVQLKA
EGNDHIERALPHHRVIEVGNNDIDDVNIIVFRQINQFDLSGNVITSSEYLPTLWVKLYKS
ENLDNPIQTVSLGQSLFFHFPPLLRDGENYIVLLDSTLPRSQYDYVLPQVSFTAVGYHKH
ITLIFNPTRKLPEQDIAQGSYIALPLTLLVLLAGYNHDKLIPLLWQLTSRLQGVRALGQA
ASDNSGLEDAKRQAKKQKTRRT
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Identical sequences XP_005391140.1.28644

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