SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_005600633.1.31192 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_005600633.1.31192
Domain Number 1 Region: 2159-2252
Classification Level Classification E-value
Superfamily C-type lectin-like 1.74e-31
Family Link domain 0.00013
Further Details:      
 
Domain Number 2 Region: 509-647
Classification Level Classification E-value
Superfamily FAS1 domain 2.75e-29
Family FAS1 domain 0.0019
Further Details:      
 
Domain Number 3 Region: 1473-1521,1599-1713
Classification Level Classification E-value
Superfamily FAS1 domain 4.32e-28
Family FAS1 domain 0.0024
Further Details:      
 
Domain Number 4 Region: 965-1122
Classification Level Classification E-value
Superfamily FAS1 domain 1.23e-23
Family FAS1 domain 0.0037
Further Details:      
 
Domain Number 5 Region: 1714-1831
Classification Level Classification E-value
Superfamily FAS1 domain 3.66e-19
Family FAS1 domain 0.013
Further Details:      
 
Domain Number 6 Region: 385-501
Classification Level Classification E-value
Superfamily FAS1 domain 4.05e-19
Family FAS1 domain 0.0051
Further Details:      
 
Domain Number 7 Region: 2250-2413
Classification Level Classification E-value
Superfamily FAS1 domain 1.57e-17
Family FAS1 domain 0.0097
Further Details:      
 
Domain Number 8 Region: 1130-1255
Classification Level Classification E-value
Superfamily FAS1 domain 0.000000000667
Family FAS1 domain 0.009
Further Details:      
 
Domain Number 9 Region: 1545-1582
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000407
Family Merozoite surface protein 1 (MSP-1) 0.088
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_005600633.1.31192
Sequence length 2522
Comment PREDICTED: stabilin-1 isoform X2 [Equus caballus]; AA=GCF_000002305.2; RF=representative genome; TAX=9796; STAX=9796; NAME=Equus caballus; breed=thoroughbred; AL=Chromosome; RT=Major
Sequence
MAGPRGLLLSLLAFCLAGSGFVMGQKVLSRRCDVKTKFVTHMPCTLCPIIKKQTCPPGWL
REFPGKISQDCRYEVQLGDSLVSMSGCSLECWKDVVQKACCPGYWGSQCYECPGGAKTPC
NGHGTCLDGIDRNGTCVCQENFSGSACQDCQDPNRFGPDCQSVCSCVHGVCRHGPLGDGS
CLCFAGYTGPRCDQELPVCQALHCPQNAQCSAEAPTCSCLPGHTQQGSECRAPDPCRPSP
CSPLAQCSVSPRGQAECRCPENYHGDGMVCLPQDPCTANHGGCPSNSTLCLYQRPGKASC
SCKPGLVSINHNASTGCFAYCLPNSCDRSATCQVTPDGKTSCVCKEGEVGDGRACYGHLL
HEVQKASQTSTAFLRLRIALAMLDQGCREVLTTSGPFTVLVPSISSIFPRTMNASIAQQL
CKQHIIAGQHILEELGTQHTHKWWTLAGQEITVTFNRFMRKYTYKYKDQPQQTFTIHKAN
YPAVNGIFHVVTALRWQPPTELPEDPKRTISQILASTEAFSRFETILENCGLPSILDGPG
PFTVFAPSNEAVDRLRDGRLIYLFTAGLSKLQELVRYHIYSHGQLTVEKLISKGRVLTMA
NQVLAVNISEEGRILLGPEGVPLRRVDVLAANGVIHMLEGILLPPTILPILPKHCNEEQH
KIVAGSCVDCQALNTSTCPPNSVMLDIFPEECVYTYDPSGLNVLKKGCARYCNQTILKPG
CCKGFFGPDCAQCPGGFSNPCYGKGNCSDGVRGNGACLCFPDYKGIACHICSNPNKHGDQ
CQEDCGCVHGLCDNRPGSGGVCQSGTCAPGFSGRFCNESTGSCGPTEQAQHCHLHARCVT
QGRVARCLCLDGFEGDGFSCTPSNPCSHPDRGGCSENAECVPGTMGTHHCTCHKGWSGDG
RVCVAIDECELDARGGCHADALCSYVGPGQSRCTCKLGFAGDGYMCSPIDPCRAGNGGCH
DLATCRAVGGGQRVCTCPPGYGGDGLSCYGDIFQELEANAHFSVFYQWIKSAGITLPADS
RVTALVPSESAIRRLSPEDQAFWLQPRMLPQLVRAHFLQGSLSEEELARLGGQDVATLSP
TTRWEIHNISGRVWVQNASVDVADLLATNGVLHVLSQVLLPPKGAMPVGQGLLQRLDSVP
AFRLFRELLQHHGLVPQIEAATAYTIFVPTNHSLEVQGNRSSLDVDTVRHHVVLGEALSV
EALQRGGHRNSLLGPAHWLVFYNHSGQPEVNHVPLEGPLLEAPGGSLFGLSGVLTVGSSR
CLHTHAEALREKCINCTRKFRCTQGFKLEDTPKKSCVYQSGYSFSQGCSYTCAKKIQVPD
CCPGFFGTLCEPCPGGLGGVCSGHGQCQDRLLGSGECRCQEGFHGTACEMCELGRYGPNC
TGVCDCAHGLCQEGLRGDGRCVCSVGWQGLRCDQKITGLQCPKKCDPNANCVQDSATAPA
CICAAGYSGNGIYCSEVDPCAHDHGGCSPHANCTKVAPGQRTCTCQDGYTGDGELCQEVN
SCLVHHGGCHLHAECIPTGPQQVSCSCREGYSGDGIRTCELLDPCSQNNGGCSPYAVCKS
IGDGQRTCTCDAAHTVGDGFSCRARVGLELLRDRHASFFSLHLLEYKELKGNGPFTIFVP
HADLMTNLSQDELARIRTQRQLVFRYHVVGCRQLRSQELLEEGYVTTLSGHPLRFSEREG
SIYINDYARVVSSDQQAVNGILHFIDRVLLPPDALHWEPDAAPIPRRNVTAAAESFGYKI
FSSLVTVAGLLPLLQDGSHRPLTMLWPTDSALRALPRDQQAWLYHEDHRDKLAAILRGHV
IRNVEALASDLPNLGPLRTMHGTPISFSCSRARPKICSICGLEPPCPQGSQEQGSPEACW
RYYSKFWMSPPLYSLALRGIWPQPSLWGPPQGLGRGCHRNCVTTTWKPSCCPGHYGSECR
ACPGGASSPCSDHGVCMDGMSGSGQCRCRSGFAGTACELCAPGAFGPHCQACRCTSHGHC
DEGLGGSGSCFCDEGWTGSRCEVQLELQPVCAPPCAPEAVCRVGNSCECSLGYEGDGRTC
TVADLCQDGHGGCSEHANCSQVGTVVTCTCLPDYEGDGWSCRARDPCADGHRGGCSEHAD
CLNTGPNTRRCVCHAGYVGDGLQCLEEPEPPVDRCLGQPPPCHVDAVCTDLHFQEKRAGV
FHLQATSGPYGLNFSEAEAACGAQGAVLASLPQLSAAQQLGFHLCLVGWLANGSAAHPVV
FPAADCGDGQVGVVSLGTRGNLSERWDAYCYREQDVACQCRDGFVGDGTSVCNGKLLDVL
ATTANFSTFYGMLLGYANATPRGLDFLDFLDDELTYKTLFVPVNEGFVDNMTLSGPDLEL
HASNTTFLSTNASQGTMLPAHSGLSLVISDVGPDNSTWVPVAPGAVVVSRVIVWDIMAFN
GIIHALASPLLAPPQPHAVVAPEAPSVAVGAGAVVATGALLGLVAGALYLRARGKATGFG
FSAFQAEDDADDDFSPWQEGTSPTLVSVPNPVFGSHDAFCEPFDDSLLEEDFPDTQRILA
VK
Download sequence
Identical sequences XP_005600633.1.31192

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]