SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_005975392.1.78601 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_005975392.1.78601
Domain Number 1 Region: 230-382
Classification Level Classification E-value
Superfamily Ribonuclease H-like 8.6e-28
Family DnaQ-like 3'-5' exonuclease 0.0011
Further Details:      
 
Domain Number 2 Region: 501-660
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 5.56e-17
Family Canonical RBD 0.0068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_005975392.1.78601
Sequence length 770
Comment PREDICTED: putative RNA exonuclease NEF-sp-like isoform X1 [Pantholops hodgsonii]; AA=GCF_000400835.1; RF=representative genome; TAX=59538; STAX=59538; NAME=Pantholops hodgsonii; AL=Scaffold; RT=Major
Sequence
MEPERERSGSTLKKGRKRRRIPSKLVGAAEAMRSRWDLEERQQPVAKKARLSTILFAENC
EITHGQLCELLKYAVLGKSSFPKPSWCQLFHQNHLKNVVVFILQGLSQLHFYKFYLEFGF
LRKAFKHKFRLPPPSSDFLADIIGLQKKQIIGNLPKATEGSLHFASSKISINLQKDPIIQ
KYGSKKVGLTRCLLTKEEMKTYHFPLQGFPDCENFVPTKCNGSVTDNSPLFGLDCEMCLT
SKGRELTRISLVAEGGGCVMDELVKPDNKIVDYLTSFSGITKKILKPVTTRLKDVQRQLK
ILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKAILGKDIQCP
DRLGHDATEDARTTLELARYFLKYGPKKIAELNLEALARHQESQEPRNTEVVQQLNTSVL
ECLDSVGQKLLFLTQEADAGALSSSKNCQTIKCLSNKEVLEQARVEIPLFPFSIVQFSFE
PFSLNLTEEMNKRIKIKWTEMSTVYAGPFNKNCNLRALKRLFKSFGPVRLMTLVLETHQP
HFCIQYEVLEAAQLAIESLDGVLVEGSCIKVQRPVTELTLDCDTLVNELEQDSENRGTIY
LSGVSETFKEHLLQQCSLFLGLEAMILPKDLKSGKRKRYCFLRFKTFGSAQRALNILTGK
DWKLKGRHALTPRHLHAWLRGLPHESRLPGVRVIPPPSEQEALQMLKVDHPKIAAWHWGR
KIGKLYHSLCSGTLCLILLPGTKSTHGSLSGLGLMGIKDEEESTTPNMCL
Download sequence
Identical sequences XP_005975392.1.78601

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]