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Domain assignment for XP_006224118.1.4139 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_006224118.1.4139
Domain Number 1 Region: 424-481
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.24e-25
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 2 Region: 228-285
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.2e-25
Family Classic zinc finger, C2H2 0.0037
Further Details:      
 
Domain Number 3 Region: 172-229
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.54e-25
Family Classic zinc finger, C2H2 0.0046
Further Details:      
 
Domain Number 4 Region: 284-341
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 9.85e-25
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 5 Region: 536-593
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.71e-24
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 6 Region: 480-537
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.43e-23
Family Classic zinc finger, C2H2 0.0031
Further Details:      
 
Domain Number 7 Region: 2-60
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 6.54e-21
Family KRAB domain (Kruppel-associated box) 0.0023
Further Details:      
 
Domain Number 8 Region: 578-630
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 8.3e-21
Family Classic zinc finger, C2H2 0.004
Further Details:      
 
Domain Number 9 Region: 117-173
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.05e-20
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 10 Region: 340-397
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 7.31e-20
Family Classic zinc finger, C2H2 0.0058
Further Details:      
 
Domain Number 11 Region: 79-131
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.05e-16
Family Classic zinc finger, C2H2 0.0072
Further Details:      
 
Domain Number 12 Region: 388-419
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000122
Family Classic zinc finger, C2H2 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_006224118.1.4139
Sequence length 649
Comment PREDICTED: zinc finger protein 420-like isoform X5 [Rattus norvegicus]; AA=GCF_000002265.2; RF=na; TAX=10116; STAX=10116; NAME=Rattus norvegicus; strain=BN; Sprague-Dawley; AL=Chromosome; RT=Major
Sequence
MEGLLSFRDVAIDFSAEECECLDLAQWSLYRDVMLENYSNLVFLGLAFSKPYLVTCLEQR
KEPWNVKEPATVAVYPGSKPYIFKECGKTFPWNSLLIQHHKIHPGAKLYTCDECGKSFNV
RSTLYKHHRTHTGEKPYKCKECGKAFTCSSSLNQHHRIHTGEKPYKCECGKAFNNSSALT
QHQRIHTGERPYKCDECGKAFNNCSARTRHQRIHTGERPYKCAQCGKTFNFPTSLSQHQR
IHTGEKPYKCEECGKAFNNCSALTQHQRIHSGEKPYKCEECGKAFYNCSALSRHQKIHTG
EKPYKCADCGKAFIFRSSLSQHQRIHTGEKPYKCKECGKAFNCSSHLNQHGRIHSGEKPY
KCEECGQTFICSSYLHKHQKIHAIEKLYECKDCGKAFSCSSYLKYHQRFHTGGKSYTCKE
CDKTFRSSSYLRNHQRFHTGEKPYTCKECGKAFVNSSSLLVHQRIHTGEKPYKCKECGKA
FRCSSYFKYHQRLHTGEKPYTCKECGKAFAKSSCLILHQRIHTGEKPYKCAECGQAFICS
SYLRKHQRIHTGEKPYTCEECGKAFSIYSTFAQHQRIHTGEKPYKCKECNKAFNNHSALI
KHQRIHTGEKPYACKECSKAFNNSSSLIRHQRIHIGIETLEIQGIWQGL
Download sequence
Identical sequences XP_006224118.1.4139

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