SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_006874080.1.41390 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_006874080.1.41390
Domain Number 1 Region: 35-125
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 4.26e-36
Family SCAN domain 0.0000409
Further Details:      
 
Domain Number 2 Region: 466-523
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.63e-25
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 3 Region: 608-664
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.58e-23
Family Classic zinc finger, C2H2 0.0036
Further Details:      
 
Domain Number 4 Region: 429-480
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.02e-18
Family Classic zinc finger, C2H2 0.0049
Further Details:      
 
Domain Number 5 Region: 569-621
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.71e-18
Family Classic zinc finger, C2H2 0.0044
Further Details:      
 
Domain Number 6 Region: 512-552
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0000000000431
Family Classic zinc finger, C2H2 0.0068
Further Details:      
 
Domain Number 7 Region: 211-264
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.0000000876
Family KRAB domain (Kruppel-associated box) 0.0096
Further Details:      
 
Domain Number 8 Region: 372-402
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000111
Family Classic zinc finger, C2H2 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_006874080.1.41390
Sequence length 679
Comment PREDICTED: zinc finger protein 263 [Chrysochloris asiatica]; AA=GCF_000296735.1; RF=representative genome; TAX=185453; STAX=185453; NAME=Chrysochloris asiatica; AL=Scaffold; RT=Major
Sequence
MASGPGSLEREGLLIVKLEEDCSWSQELPPSDAGSSPQSAHLRFRRFRFQEAAGPREALS
RLQELCHEWLRPELRTKEQILELLVLDQFLSILPPEIQSRVQELHPESGEEAVTLVEDVQ
RELGRLRQQVTNHGRGTAVLLEPLPLETAQESPSFKLEPVETERSPGPRLQELLGPSPQR
DPQAVKERALSPPWLSLSPPEGNTEDKELTAPQLPENLEDVAVYISQEWGQQEPRKRALS
RDLVQESYETVDSLESSSLHQETLSPQMEQGRNLRNPGVQSCKEDLRPINPTAGEGKFED
QEETAQPVAPENTHPQELPGQARREVPWSPEQGRPQDGSEGHWDLPPNNRLEQSLVGATN
CREMGQPKELQPKKLHLCPLCGKNFSNNSNLIRHQRIHAAERLGVECADLFGGNPHFLSL
HRAHLGEEAHKCLECGKSFSQNTHLTRHQRTHTGEKPYQCNICGKSFSCNSNLHRHQRTH
TGEKPYKCPECGEIFAHSSNLLRHQRIHTGERPYKCPECGKSFSRSSHLVIHERTHEKER
LYPFSECGEAVSDCTPFLTNHGAPKVEKKLFECLTCGKSFGQGMHLTRHQRTHTGEKPYK
CTLCGENFSHRSNLIRHQRIHTGEKPYTCHECGDSFSHSSNRIRHLRTHTGERPYKCSEC
GESFSRSSRLMSHQRTHTG
Download sequence
Identical sequences XP_006874080.1.41390

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]