SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_007451924.1.90284 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_007451924.1.90284
Domain Number 1 Region: 2206-2300
Classification Level Classification E-value
Superfamily C-type lectin-like 2.02e-31
Family Link domain 0.00013
Further Details:      
 
Domain Number 2 Region: 506-644
Classification Level Classification E-value
Superfamily FAS1 domain 1.44e-28
Family FAS1 domain 0.0019
Further Details:      
 
Domain Number 3 Region: 1470-1518,1596-1710
Classification Level Classification E-value
Superfamily FAS1 domain 3.01e-26
Family FAS1 domain 0.0028
Further Details:      
 
Domain Number 4 Region: 1711-1865
Classification Level Classification E-value
Superfamily FAS1 domain 8.76e-25
Family FAS1 domain 0.0063
Further Details:      
 
Domain Number 5 Region: 962-1119
Classification Level Classification E-value
Superfamily FAS1 domain 9.16e-23
Family FAS1 domain 0.0056
Further Details:      
 
Domain Number 6 Region: 386-498
Classification Level Classification E-value
Superfamily FAS1 domain 3.92e-20
Family FAS1 domain 0.0051
Further Details:      
 
Domain Number 7 Region: 2297-2460
Classification Level Classification E-value
Superfamily FAS1 domain 7.59e-17
Family FAS1 domain 0.0075
Further Details:      
 
Domain Number 8 Region: 1128-1251
Classification Level Classification E-value
Superfamily FAS1 domain 0.000000000576
Family FAS1 domain 0.006
Further Details:      
 
Domain Number 9 Region: 1542-1579
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000167
Family Merozoite surface protein 1 (MSP-1) 0.055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_007451924.1.90284
Sequence length 2569
Comment PREDICTED: stabilin-1 [Lipotes vexillifer]; AA=GCF_000442215.1; RF=representative genome; TAX=118797; STAX=118797; NAME=Lipotes vexillifer; AL=Scaffold; RT=Major
Sequence
MAGPRDHLLLCLLALCLAGFSFIGGQKVQSRRCDMKTKFVTHIPCTPCPAIKKRVCPSGW
LREFPEKISQDCRYEVQLGDSLLSVSGCSVECSKDVVQKACCPGYWGSQCYECPGGAETP
CNSHGTCLDGIDRNGTCVCQENFSGSACQECRDPNRFGPDCQSVCSCVHGVCRHGPLGDG
SCLCFAGFTGPHCDQELPVCQALNCPQNSQCSAEAPTCSCLPGHTQQGGECLAPDPCQPS
PCSPVAQCSVSPRGQAQCRCPENYHGDGTVCLPQDPCTANNGGCPSNSTLCLYKRPGQAS
CSCKPGLVSTNRNASAGCFAFCFPYSCDRSATCQVTPDGKTSCVCKDGEVGDGRACYGHL
LHEVQKASQTSMTLLRLRVAFAMLDQGCREILSTSGPFTVLAPSISSRTMNASLAQQLCR
QHIIAGQHMLEESGTQPTRRWWTLAGQEITVTFGRFRKYTYKYKDQPQQTFTIHKANYPA
ANGIFHVVTALRWQPPPELPEDPKRTIGQILASTEAFSRFETILENCGLPSFLDGPGPFT
VFAPSNEAVDGLRDGRLVYLFTAGLSKLQELVRYHVYSHGQLTVEKLISKGRVLTMANQV
LAVNISEEGRILLGPEGVPLRRVDVLAANGVIHMLEGILLPPTILPILPKLCNEEQHKVV
AGSCVDCQALNTSMCPPNSVKLDISPEECVYIHDPTGLNVLKKGCAHYCNQTILKPGCCK
GFFGPDCVQCPGGFSNPCYGKGNCSDGVQGSGACLCFPDYKGIACHICSNPNKHGDQCRQ
DCGCVHGLCDNRPGSGGVCQRGTCAPGFSGRFCNESTGNCGPTEQAQQCHPHARCVNQGD
VARCLCLDGFEGDGFSCTPSNPCSRPDRGGCSENAECVPGAPGTHHCTCHKGWSGDGRVC
VAIDECELDVRGGCHADALCSYVGPGQSQCTCKLGFAGDGYVCSPIDPCRAGNGGCHDLA
TCRAVGGGQRVCTCPPGYGGDGFSCYGDIFQELEANAHFSIFCQWIKGPAIPLPADSRIT
ALVPSESAIRRLSPEDQTFWLQPRMLPQLVRAHFLQGALSEEELARLDGQSVATLSPTAR
WEIHNISGRVWVQNASVDVADLLATNGVLHVLSQVLLPPRGDVLGGQGLLQQLDSVPAFR
LFRELLQRHRLVPQIEAATAYTIFVPTNHSLEAQANSSGLDLDVVRHHVILGEALSTEAL
RGGGHRSSLLGPTHWLVFYNRSGQPEVNHVPLEGPVLEAPGRSLFGLSGVLTVGSSRCLH
SHAEALREKCVNCTRKFRCTQGYQLEDTPKKSCVYRSGYSFSRGCSYTCAKKIQVPDCCP
GFFGTLCEPCPGGLGGVCSGHGQCQDRLLGSGECRCHEGFHGTACEMCELGRYGPNCTGV
CDCAHGLCQEGLRGDGSCVCNVGWQGLRCDQKITGPQCPQKCDPNANCVQDLAAAPACVC
AAGYSGDGIYCAVVDPCAHDHGGCSPHANCTNVAPGQRTCTCLDGYTGDGELCQEVNGCL
IHHGGCHMHAECIPTGPQQVSCSCREGYSGDGIRTCVLLDPCSQNNGGCSPYAVCKSTGD
GQRMCTCDAVHTVGDGFTCRARVGLELLRDKHASFFSLHLLEYKELKGDGPFTIFVPHAD
LMTNLSQDELARIRANRQLVFRYHVAGCRQLRSQELLEEGYTTTLSGHPLRFSEREGNIY
INDFARMVSSDHEAVNGVLHFIDRVLLPPEVLHWEPDAAPIPRRNFTAAAESFGYKIFSG
LVTMAGLLPLLRDSFHRPFTMLWPTDSALQALPPDRQVWLYHKDHRDKLAAIVRGHMIRN
VEALASDLPNLGPLRTMHGTPISFSCSRARPGELTVGEDDARIVQRYLPFDGGLAYGIDQ
LLEPPGLGARCDRFETRPLWLKVCGICGLEPPCPEGSQEQGSPEACWRYFSKLWTSPPLH
SSALRSVWARPSHWGQPQGLGRGCYRNCVTTTWKPSCCPGHYGSECRACPGGASSPCNGH
GTCMDGMSGSGNCRCHSRFAGMACELCAPGAFGPLCQACNCTSHGHCDEGLGGSGSCFCD
EGWTGPHCEVQLELQPVCAPPCASQAVCRAGHRCECSLGYEGDGRTCTVVDLCQDGRGGC
SEHANCSQVGTVVTCTCLPDYEGDGWSCRARNPCEDGHRGGCSEHADCLSTGPNTRRCAC
HAGYVGNGLQCLEEPEPPVDRCLDQPPPCHVDAVCTDLHFQEKRAGVFHLQAPSGSYSLN
FSQAEAACGAQGAVLASLPQLSAAQQLGLHLCLVGWLANGSAAHPVVFPAADCGNGQVGV
VNLGARENLSERWDAYCYRMQDVACRCRDGFVGDGASVCNGKLLDVLATTANFSTFYGML
LGYANATPRGLDFLDFLDDELTYKTLFVPVNEGFMDNLTLSGPDLELHASNTTFLSTNAS
QSTLLPAHSGLSLIISDMGPDNSSQAPVVPGAVVVSHVIVWDIVAFNGIIHTLASPLLAP
PQPRAVVAPEAPPVAAGAGAVVAAGALLGLAAGALYLRARSRSAGFGFSAFQAEDAAADD
FSPWQEGTSPTLVSVPNPVFGSHDAFCEPFDDALLEDDFPDTQRILEVK
Download sequence
Identical sequences XP_007451924.1.90284

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]