SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_007713479.1.9443 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_007713479.1.9443
Domain Number 1 Region: 19-277
Classification Level Classification E-value
Superfamily Galactose mutarotase-like 9.1e-78
Family Rhamnogalacturonase B, RhgB, N-terminal domain 0.0000000834
Further Details:      
 
Domain Number 2 Region: 369-537
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 6.12e-49
Family Rhamnogalacturonase B, RhgB, C-terminal domain 0.00000121
Further Details:      
 
Domain Number 3 Region: 280-362
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.0000000000114
Family Rhamnogalacturonase B, RhgB, middle domain 0.0000638
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_007713479.1.9443
Sequence length 538
Comment polysaccharide lyase family 4 protein [Bipolaris zeicola 26-R-13]; AA=GCF_000523435.1; RF=representative genome; TAX=930089; STAX=5017; NAME=Bipolaris zeicola 26-R-13; strain=26-R-13; AL=Scaffold; RT=Major
Sequence
MYLRTALLTLASTTTTLAAFGVTKGKNSITIDSGAPSSSSPFLFTVNTLNCDITSLKYAG
EELQWPDKGSHIEMGLGSATVTYTTIGTQYIKITCTTPTLTQYMVVKAGESTIYMATDIT
EEPTIGELRFIARIDSGKLPLSYPFGVVSTTANSTATVEGSDVFVVGGETRSKFYSSERF
IDDAVHCVYRDTNAIHACLLMDSYSYETSAGGPFHRDINTNNGGASNSLTFYMNSNHVQL
EKYRMGMKGPYALSFSRSSIPKGGSSMDTTFFKDLSIPNYVPPSARGTVTGKATGVSSSA
QAVLHWYNDAAQYWAYASSSSGTFTSPAMKPGTYTQVLYQGEFKVKATSVTVAAGRTTTA
NIAADTEPKTSLWRIGEWDGQPKGFRNADKQLRMHPSDSRMASWGPLTYTVGTSALDSVP
MALVKDLNPLTIAFTAKQKNSTPLTLRVGTTLAFAGCRPAVTVNTSFSAPVPAAPTKIAS
RGFTRGAYRGFGEVYNYAIPAGTLVEGANTIRIACVSGESGTGFLAPNVILDAIELLE
Download sequence
Identical sequences W6XXN0
XP_007713479.1.9443 jgi|Cocca1|37792|fgenesh1_pm.102_#_2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]