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Domain assignment for XP_009105448.1.100322 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_009105448.1.100322
Domain Number 1 Region: 437-473,520-608
Classification Level Classification E-value
Superfamily TPR-like 0.00000345
Family Tetratricopeptide repeat (TPR) 0.02
Further Details:      
 
Weak hits

Sequence:  XP_009105448.1.100322
Domain Number - Region: 343-470
Classification Level Classification E-value
Superfamily HCP-like 0.0549
Family HCP-like 0.022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_009105448.1.100322
Sequence length 745
Comment PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Brassica rapa]; AA=GCF_000309985.1; RF=representative genome; TAX=3711; STAX=3711; NAME=Brassica rapa; cultivar=Chiifu-401-42; AL=Chromosome; RT=Major
Sequence
MASNYYSAQIKQCLEFGTRNQSRHLKTIHGHIIKTLPCPETILHNKIIHAYSKLRNSTYA
RRVFDEIPQPNLYSWNSLLMAYSQSGHHLSEMERTFKRLPERDGVSWNLLISGYSLSGLV
GEAVKAYNTMMKDGSGDFLTRVSVMTMLKLCSDNGRVGLGKQVHVQVVKRGFESYLLVGS
ALMDMYAKVGFISDAKTVFYGLEDRNTVMYNSLMGGLLASGMVEDAKKLFRGMEKDSVSW
TAMIKGLSQNGLEKEAIEFFREMKMEGLAMDQFTFGSVLPACGGLGAIEEGKKIHACVIR
TNFQDNIYVGSALVDMYCKCKCIDYAKTVFDGMRQKNVVSWTAMVVGYGQSGRAEEAVKM
FLEMQRSGIEPDHYTLGQAISACANISSLEEGSQFHGKAVVSGFVHYVIVSNSLVTLYGK
CGNIDDSTKLFNEMSFRDEVSWTAMVSAYAQFGRAIEAIDLFDRMVQHGLNPDGVTLTGV
ISACSRAGLVEKGQRYFELMTNEYGIVPSNGHYSCMIDLFSRSGRLEEAMNFINGMPFPP
DAIGWITLLSACRNKGNLEIGKRAAESLIELDPHHPAGYTLLLSIYASKGRWDCVAQLRR
KMREKNVRKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNQKIIEDGYKPDTSF
VQHDVEEAVKIKMLNYHSERLAIAFGLIFVPAGLPIRVGKNLRVCVDCHIATKHISRVTG
REIIVRDAVRFHRFKDGTCSCGDFW
Download sequence
Identical sequences M4CJG6
XP_009105448.1.100322 XP_018508888.1.100322 XP_018508889.1.100322 Bra004350

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