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Domain assignment for XP_009131446.1.100322 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_009131446.1.100322
Domain Number 1 Region: 339-532,559-611
Classification Level Classification E-value
Superfamily Phospholipase D/nuclease 1.67e-74
Family Tyrosyl-DNA phosphodiesterase TDP1 0.00000107
Further Details:      
 
Domain Number 2 Region: 146-363
Classification Level Classification E-value
Superfamily Phospholipase D/nuclease 1.78e-58
Family Tyrosyl-DNA phosphodiesterase TDP1 0.00019
Further Details:      
 
Domain Number 3 Region: 18-110
Classification Level Classification E-value
Superfamily SMAD/FHA domain 0.000000000845
Family FHA domain 0.0049
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_009131446.1.100322
Sequence length 612
Comment PREDICTED: tyrosyl-DNA phosphodiesterase 1 isoform X1 [Brassica rapa]; AA=GCF_000309985.1; RF=representative genome; TAX=3711; STAX=3711; NAME=Brassica rapa; cultivar=Chiifu-401-42; AL=Chromosome; RT=Major
Sequence
MASSQVAYLIPLKPDLKEDNSSPRITLSEGPNTIGRLNVSTTDKRLSRKHITITPSASGS
ASLSVEGTNPVVVRSSGERKKVNPRGEVSLANDDLIELIPGHHFFKLVLPRESERGSYER
AAKKARKEGDDVEAIRSFCPDSEKLPSTFRLLSVDGLPDWANTSCVSINDVVEGDVVAAV
LSNYMVDLDWLLSACPKLVNIPQVMVVHGEGDGRQEYIQRKKPANWILHKPRLPISFGTH
HSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPWKSDDDNIDTPKVCGFEDDL
VDYLAVLKWPEFTACLPGRGNVKINAAFFRKFDYSSATVRLIASVPGYHTGSNMRKWGHM
KLRTILQECIFDREFRRSPLVYQFSSLGSLDEKWLAEFGASLSSGITEDRTPLGHGDPLI
IWPTVEDVRCSLEGYAAGNAIPSPLKNVEKPFLKKYWAKWKADHSARSRAMPHIKTFTRY
SDQKIAWFLLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPSPVKTQACNFSCTDNNS
STKKVKQETKGEVEKRSKLVTMTWQGDRDSPEIISLPVPYQLPPEPYSSEDVPWSWDRGY
SKKDVYGQVWPR
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Identical sequences M4CPZ8
Bra006287 XP_009131446.1.100322

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