SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_011066716.1.86870 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_011066716.1.86870
Domain Number 1 Region: 190-224
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000903
Family LDL receptor-like module 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_011066716.1.86870
Sequence length 564
Comment PREDICTED: uncharacterized protein LOC105153513 [Acromyrmex echinatior]; AA=GCF_000204515.1; RF=representative genome; TAX=103372; STAX=103372; NAME=Acromyrmex echinatior; AL=Scaffold; RT=Major
Sequence
MFDGARQVVPLIFVIAILHRAYGDNMIRANEKRHGGTNDYQMCLESFDIHKDKIIRTQDS
RDMGAKYLNVLDVDSRLDCLKYCCETERCDVFIFEEKKPSSCYLFQCGPLHDFKCKFTRH
ANYTSAVRTSYPNVQVEEEVRISHQEHELKSLRKSNEITSDYGFTETPVKPVITQISKVI
VTTPIPVKPACTRNQYECRTSGDCIAIYNVCDGIPQCADGSDEAADLVCPTEKPTVPPII
QMPHPPADMLRYQQIVSQRKPLPPFYPGPEINPKPWDISNLAHQMPQPQNILYPGQPVEV
PQMQIHKNYGSSGYQWDYQPLYEQNKDSYVPANTVHEQHINPYEQQPHIFNHKGSSVIEN
NEANRELYMESKHPYSPHFPSSNKVPVWHENPVQFAPSVAPNSQPKQAVENLPIMTTPTC
DTSEEHKNELTNENKEPIKKEKTNTYSTHVKMSKKVTEKPTLSANEITKHNRAKESKDHK
TVIVIEEHAKTREKSDIIAEHLQIIENDVLRPKGAVVSLSLGLIATAITAALIVCRLRVV
KRRARCGHGPFAHDADYLVNGMYL
Download sequence
Identical sequences F4X6Y8
XP_011066716.1.86870 Aech_16757

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]