SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_011727137.1.29376 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_011727137.1.29376
Domain Number 1 Region: 178-416
Classification Level Classification E-value
Superfamily Nuclear receptor ligand-binding domain 1.03e-102
Family Nuclear receptor ligand-binding domain 0.00000000777
Further Details:      
 
Domain Number 2 Region: 88-174
Classification Level Classification E-value
Superfamily ECOD 3.06e-58
Family ECOD 0.00013
Further Details:      
 
Domain Number 3 Region: 90-164
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 4.7e-56
Family Nuclear receptor 0.00098
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_011727137.1.29376
Sequence length 454
Comment PREDICTED: retinoic acid receptor gamma isoform X2 [Macaca nemestrina]; AA=GCF_000956065.1; RF=representative genome; TAX=9545; STAX=9545; NAME=Macaca nemestrina; AL=Scaffold; RT=Major
Sequence
MATNKERLFAAGALGPGSGYPGAGFPFAFPGALRGSPPFEMLSPSFRGLGQPDLPKEMAS
LSVETQSTSSEEMVPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQK
NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSY
ELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIK
IVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMH
NAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEA
LRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPE
MFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA
Download sequence
Identical sequences A0A096MRJ1 A0A2J8SXA0 A0A2K5ESJ5 A0A2K5N2N6 A0A2K5XRB2 A0A2K6BU81 A8K3H3 G7N741 G7PHU3 H2Q616 P13631
9544.ENSMMUP00000028994 9598.ENSPTRP00000008522 9606.ENSP00000332695 gi|4506423|ref|NP_000957.1| IGBMC-0078-000 ENSPTRP00000008522 ENSP00000332695 6fx0_A ENSMMUP00000028994 ENSMMUP00000016394 ENSPTRP00000008522 ENSP00000388510 NP_000957.1.87134 NP_000957.1.92137 XP_003831072.1.60992 XP_008001592.1.81039 XP_008001593.1.81039 XP_008954669.1.60992 XP_011727137.1.29376 XP_011727138.1.29376 XP_011857082.1.47321 XP_011903497.1.92194 XP_011903498.1.92194 XP_011903499.1.92194 XP_012305732.1.9421 ENSP00000377947 ENSP00000388510

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]