SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_012398801.1.9362 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_012398801.1.9362
Domain Number 1 Region: 283-344
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 8.89e-25
Family KRAB domain (Kruppel-associated box) 0.0015
Further Details:      
 
Domain Number 2 Region: 510-566
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.05e-22
Family Classic zinc finger, C2H2 0.0051
Further Details:      
 
Domain Number 3 Region: 566-622
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.87e-22
Family Classic zinc finger, C2H2 0.0073
Further Details:      
 
Domain Number 4 Region: 928-984
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.08e-21
Family Classic zinc finger, C2H2 0.0066
Further Details:      
 
Domain Number 5 Region: 815-872
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.41e-20
Family Classic zinc finger, C2H2 0.0077
Further Details:      
 
Domain Number 6 Region: 969-1021
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.17e-20
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 7 Region: 872-928
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 8.9e-20
Family Classic zinc finger, C2H2 0.0081
Further Details:      
 
Domain Number 8 Region: 474-523
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000376
Family Classic zinc finger, C2H2 0.0041
Further Details:      
 
Domain Number 9 Region: 778-829
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000394
Family Classic zinc finger, C2H2 0.0073
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_012398801.1.9362
Sequence length 1089
Comment PREDICTED: zinc finger protein 316 [Sarcophilus harrisii]; AA=GCF_000189315.1; RF=representative genome; TAX=9305; STAX=9305; NAME=Sarcophilus harrisii; AL=Scaffold; RT=Major
Sequence
MAALHTAPDSPTSQLERMEVRPECEADHEEREGSSDLVEDSPEEGEGSPEPMEESPEEGE
GSPEPIEGSPEEDESSPEDNEHNSELIDGSPEAIDDFPEPIEGSPGPILGSPEPMMGSPG
PIDDIPEPIDSISEPIMGSPEQPIDSIPEPIMGSPEPIDSIPEPIMGSPEVIEGSPEPNM
GSPEVIEGSPEPIEGSPEPIMGSPEVIEGSPEPIESSPEVIQGSPEVIEGSPEPEPQEPL
NHDSKMESPVLQEKAVSVSWVPAILKKEIIADDETATDFLTTESQGLVTFEDVAVYFSLE
EWGRLNEAQKDLYKEVMQENYGILVSLGYPIPKPDVISRMERGEELWVPDSPGPEEGDIL
TGVYTGGWFWNEDEEDEDEDEEEGPLENPEESEPPGVWSAAYGVGDVPGTWGPDDSIQVQ
PSDLWGGDPANLGMVPEGQEMKPILHSGEGGAPLLPPWAFSAVVEAAGGRPETTCDVCGK
VFPHRSGLAKHRRYHAAVKPFGCEECGKGFVYRSHLAIHQRTHTGEKPFPCPDCGKRFVY
KSHLVTHRRIHTGERPYRCSFCGAGFGRRSYLVTHQRTHTGERPYPCPQCGRSFSQSSAL
ARHQAVHTAEKPHCCPDCGRAFRLRADFQRHRRGGKCSDLREEARREESEGPELGGESLD
PVNESPVIDRNYPELGNGFGEGEGPSHPLDFHFPLPPKSWLHGENLPMLALQDFGERVAH
ELVDAPPIPSHLGSQISLIDGTAMPCDPCAPGLLSFGPSVGSLLSDPQPSSMLEEETPWI
CSDCGKTFGRRAALAKHQRYHAGDRPHRCADCGKSFVYGSHLARHRRTHTGERPFPCPEC
GARFARGSHLAAHVRGHTGEKPFVCGVCGAGFSRRAHLTAHGRAHTGERPYACGECGRRF
GQSAALTRHQWAHAEEKPHRCPDCGKGFGHRSDFKRHRRTHTGEKPFRCADCGRGFAQRS
NLAKHRRGHTGERPFPCPECGKRFSQRSVLVTHQRTHTGERPYACAACGRRFSQSSHLLT
HMKTHRGTTTTGPAAKAEGAGQNQASRPSGEKEDNSNPKVEFGGNSSSFASEEPTMFPGP
SCSYEETLM
Download sequence
Identical sequences XP_012398801.1.9362 XP_012398802.1.9362

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]