SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_013004471.1.53824 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_013004471.1.53824
Domain Number 1 Region: 520-577
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.24e-24
Family Classic zinc finger, C2H2 0.0043
Further Details:      
 
Domain Number 2 Region: 184-241
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.59e-23
Family Classic zinc finger, C2H2 0.0053
Further Details:      
 
Domain Number 3 Region: 576-633
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.35e-22
Family Classic zinc finger, C2H2 0.0083
Further Details:      
 
Domain Number 4 Region: 464-521
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.61e-22
Family Classic zinc finger, C2H2 0.0074
Further Details:      
 
Domain Number 5 Region: 352-409
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.69e-21
Family Classic zinc finger, C2H2 0.0073
Further Details:      
 
Domain Number 6 Region: 240-297
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.44e-21
Family Classic zinc finger, C2H2 0.0055
Further Details:      
 
Domain Number 7 Region: 408-465
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.58e-20
Family Classic zinc finger, C2H2 0.0086
Further Details:      
 
Domain Number 8 Region: 128-185
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.91e-19
Family Classic zinc finger, C2H2 0.006
Further Details:      
 
Domain Number 9 Region: 296-353
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.65e-18
Family Classic zinc finger, C2H2 0.012
Further Details:      
 
Domain Number 10 Region: 2-47
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 6.28e-16
Family KRAB domain (Kruppel-associated box) 0.0011
Further Details:      
 
Domain Number 11 Region: 622-674
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000164
Family Classic zinc finger, C2H2 0.0085
Further Details:      
 
Domain Number 12 Region: 95-142
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000117
Family Classic zinc finger, C2H2 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_013004471.1.53824
Sequence length 681
Comment PREDICTED: zinc finger protein 260-like isoform X2 [Cavia porcellus]; AA=GCF_000151735.1; RF=representative genome; TAX=10141; STAX=10141; NAME=Cavia porcellus; strain=inbred line 2N; AL=Scaffold; RT=Major
Sequence
METVTFEDVTVKFTPEEWDLLTPFQKKLYRGVMWETYMNVTVTRRIWHNLQIKEEDKNCS
RNLRYDGDNYLRIEEQQYKYNEDVETCSDFQSFQKQCEKAFSTLSSCQRHKNIHTGEKPC
VYNKCGKAFTTASKCKALDRTHTGEKHFRCRQCGKSFNRKDNLINHERVHTGEKPYVCNK
CGKAFSRASGYKTHERIHTGEKPFVCKQCGRSFNRKDNLSNHERVHTGEKPFVCNKCGKA
FISASQCHNHDRVHTVEKPFVCKECGKSFNRKDNLINHERIHTGEKPYVCNKCGKAFISA
SQCQKHDRIHTRVKPLVCNQCGKFFKQKRYLIMHEILHTAEKPYVCNKCGKAFISASQYQ
IHDRIHTGERPFLCKQCGKSFMQKRHLIIHGRIHTEEKPFLCKQCGKSFKQKHYLIIHER
LHTAEKPYVCNKCGKAFISASKCQIHGRIHTGERPFLCKQCGKSFTQKRYLITHDRIHTE
EKPFLCKQCGKSFKQKHYLIIHERLHTGEKPYVCNRCGKAFSSASSLKAHDRIHTGEKPY
VCKQCGKSFSHNSTLIIHERIHTGEKPFVCNKCGKSFNQKDNLIKHERIHTGEKPYVCNT
CGKAFVSAKRCKAHCRIHTGEKPFVCNQCGKSFKQKRSLIMHESLPAGVKPYVCNKCGKA
FRTASSCKKHERTHWGDTICM
Download sequence
Identical sequences XP_013004471.1.53824

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]