SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_013209540.1.66349 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_013209540.1.66349
Domain Number 1 Region: 140-200
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 3.4e-25
Family KRAB domain (Kruppel-associated box) 0.0012
Further Details:      
 
Domain Number 2 Region: 368-424
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.5e-22
Family Classic zinc finger, C2H2 0.0053
Further Details:      
 
Domain Number 3 Region: 838-894
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.11e-21
Family Classic zinc finger, C2H2 0.0066
Further Details:      
 
Domain Number 4 Region: 725-782
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.29e-20
Family Classic zinc finger, C2H2 0.0077
Further Details:      
 
Domain Number 5 Region: 879-931
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.3e-20
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 6 Region: 782-838
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 8.67e-20
Family Classic zinc finger, C2H2 0.0081
Further Details:      
 
Domain Number 7 Region: 424-480
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 9.57e-20
Family Classic zinc finger, C2H2 0.01
Further Details:      
 
Domain Number 8 Region: 688-739
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000123
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 9 Region: 332-381
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000234
Family Classic zinc finger, C2H2 0.0041
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_013209540.1.66349
Sequence length 1000
Comment PREDICTED: zinc finger protein 316 [Microtus ochrogaster]; AA=GCF_000317375.1; RF=representative genome; TAX=79684; STAX=79684; NAME=Microtus ochrogaster; AL=Chromosome; RT=Major
Sequence
MAALHTTPDSRATQLEPAEDGSKCDADPDEDGDEEEKGREEAEGEEKAEEVVVEEEEVAT
QFQEVEVEANSEDAAGADSVEEGLAKEQRLSLGTQEQLSNGGDVKSPVLQGKARQASRVS
PAIQDEDPEEEEEEEDDHFLTQGLVTFEDVAMYFTLEEWERLDVDQRDLYREVMKENYGI
LVSLGYPIPKPDLIFHLEQGNEPWVPDSPHPEEGDIVTGVYTGAWFWNDDIEDHEEEDDE
DFLAEMAEEENEPPGLWSAAYGVGDVPGTWGPDDSDSVQTPDGWGPSPGSLGILAEEVET
KHFLSGREPGENFLAPWGFPAAAVPIGCPETTCDVCGKVFLHRSRLAKHQRYHAAVKPFG
CEECGKGFVYRSHLAIHQRTHTGEKPFPCSDCGKRFVYKSHLVTHRRIHTGERPYRCAFC
GAGFGRRSYLVTHQRTHTGERPYPCLHCGRSFSQSSALARHQAVHTADRPHCCPDCGQAF
RLRADFQRHRRSGCTEPSSGEGAGMAPHEMEMAIAAVATAEPEELEARPEETKEPGTDVA
DGDTEAEAREDEEVVAAAAEATVPDSKKDPEPDRQFREMGNGLSGGEGPSSHTLGFHFPM
HPKSWLHPDSFPILGFPEFSERLQVDGRHLSGPLGPPLSLEGAGLACDPFRSAGPGVGTD
GGLRAFAPTVGSLLAEPAPAAMAEEESPWICSDCGKTFGRRAALAKHQRYHAGERPHRCA
DCGKSFVYGSHLARHRRTHTGERPFPCPECGARFARGSHLAAHVRGHTGEKPFVCGVCGA
GFSRRAHLTAHGRAHTGERPYACGECGRRFGQSAALTRHQWAHAEEKPHRCPDCGKGFGH
SSDFKRHRRTHTGEKPFRCADCGRGFAQRSNLAKHRRGHTGERPFPCPECGKRFSQRSVL
VTHQRTHTGERPYACANCGRRFSQSSHLLTHMKTHRGQAGAQMQNTAAKAQAPAKATPPP
PPPGSGTGSGTLLEFAGGTSFGSDPAAFAGPSGAYEESVL
Download sequence
Identical sequences XP_005368063.1.66349 XP_013209540.1.66349

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]