SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_014192642.1.24487 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_014192642.1.24487
Domain Number 1 Region: 37-329
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 2.62e-55
Family Integrin alpha N-terminal domain 0.0000000803
Further Details:      
 
Domain Number 2 Region: 597-820
Classification Level Classification E-value
Superfamily Integrin domains 5.75e-51
Family Integrin domains 0.0000333
Further Details:      
 
Domain Number 3 Region: 455-589
Classification Level Classification E-value
Superfamily Integrin domains 1.05e-35
Family Integrin domains 0.0000114
Further Details:      
 
Domain Number 4 Region: 319-454
Classification Level Classification E-value
Superfamily Integrin domains 2.14e-29
Family Integrin domains 0.0000939
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_014192642.1.24487
Sequence length 867
Comment PREDICTED: integrin alpha-5-like isoform X2 [Haplochromis burtoni]; AA=GCF_000239415.1; RF=representative genome; TAX=8153; STAX=8153; NAME=Haplochromis burtoni; AL=Scaffold; RT=Major
Sequence
MGTVPGLSPTRSWGKCCECAVLALPVVVLWFQLGAAFNLDTENRVVFTGPPGSYFGYSVE
FFKNSSSINILIGAPKANTSQPNVTEGGAVYMCPWSQNNCTIISFDKQGDRYFYINDVNT
QVEFKSHQWFGATVRAHGSSVLACAPRYYWRTEHDIPFSDVTGTCYLAVDNLKRFVEFAP
CRTERHGPAGQGYCQGGFSADFTKDGRVVLGGPGSFYWQGQLISATTEEIVKAYYPAYFL
LSVAGQIQTRQVQGSYDDSYLGYSVASGEFSGDGEEDFVTGVPKGLMLYGLVSILNGSDL
KSLLNLTGEQMGSYFGYAVATTDINSDGVSITFCLLANGKHLPSHLGFVAEVQLDSGKQK
QKESIRRTLFLDSQQPSLVKTFNLTNRKPLCHNSNIYLRPEEEFRDKLSPIYISLNFSLD
PQAPLDQHGLRPILNYETEQLIEQKAQIQLDCGDDNICVPDLKLAVYGDKTEVYLGDENS
VSLTFNARNEGEGGAYEAELYVALPPEADYSGIARNNVSLTQLTCSYEAENQTRYLVCDL
GNPMKSGTSLWAGLRFTIPRLSDTYNTVQFELQIRSKNANNSESEVVFYELKVSAMADVI
LQGVSRPDKVIFPPPNWTVRQGLGEEQEIGPELQQVFELVNNGPSVVSQTSLVVKCPLKA
HGHWLLYPLEVVTEGPLSCFSKTTLNALKLKLQPGAVEGPASLKSNVEHRIQKREVHRDP
LAEQGNLTCSTVECWQLQCNVGLLQRGRSVILTVRSRVWAETFMERAYKQYTLECSVHFS
VDRMPYSVSPTLKPSGSKKVATAVMWNKPNSQYSVPVWIIILAVLAGLLLLALLIYLLYK
MGFFKRSDPYGTTMEKAKLKPQASSEA
Download sequence
Identical sequences XP_014192642.1.24487

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]