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Domain assignment for XP_014556539.1.39273 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_014556539.1.39273
Domain Number 1 Region: 413-574
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 8.42e-23
Family Rhamnogalacturonase B, RhgB, C-terminal domain 0.014
Further Details:      
 
Domain Number 2 Region: 303-402
Classification Level Classification E-value
Superfamily Starch-binding domain-like 0.000000000647
Family Rhamnogalacturonase B, RhgB, middle domain 0.034
Further Details:      
 
Domain Number 3 Region: 112-299
Classification Level Classification E-value
Superfamily Galactose mutarotase-like 0.0000179
Family Rhamnogalacturonase B, RhgB, N-terminal domain 0.024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_014556539.1.39273
Sequence length 576
Comment polysaccharide lyase family 4 protein [Bipolaris victoriae FI3]; AA=GCF_000527765.1; RF=representative genome; TAX=930091; STAX=40125; NAME=Bipolaris victoriae FI3; strain=FI3; AL=Scaffold; RT=Major
Sequence
MKALLPLLCGGAGIVASAYSQHPSAPEQPKSFFRQIGNSTWILGNELWNLTQNAQYATKL
MYRGKDRVGEAVGHYVSYNGAASDLRWTTASIAASGSNWLDIRFSAAEGDFHWVLHDDLA
GAYQYFINRGLPTLGEFRSLWRLSNTSFPRASTNTKTGLLPPLSLYQNATNVQDETWQQS
DGTFLTKYDWAAFLREQTAYGVWGDEVGSWYLHAGKEYLNGDHLKQELMVHRESKTGDTV
QLNMLHGTHYQASSRDSFAAGNDEARIWGPWLWYLNDGSRQDAVERWEREEKEWPYAWFE
NAAYQSRGAVQGKLVLSDGRPAAGAAVFLGDNRNETVSTLDQGQNYYYTAYADDAGEFRI
RDVRSGTYALYAWGNGRSIADVITNFTHNDVEIVKGKTTSLPLLTWSVTDKTKRIFQIGD
FDRKTDGFYLADPAIPVQHARIDKCPANLTYIIGTSTPSKDWCFGQSKVGTWSVSFPASL
DNSTAAKLVVSLAGFSQGSSADILLNEAKIGNVTSASLANSQDTYRGATRAGEWRRLEFG
VPRGLLKEGQNRLDVRVTKSTQWRGWLWDSLVLEAV
Download sequence
Identical sequences W7ESH0
jgi|Cocvi1|99409|e_gw1.43.117.1 XP_014556539.1.39273

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