SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_014995046.1.72884 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_014995046.1.72884
Domain Number 1 Region: 5-90
Classification Level Classification E-value
Superfamily PDZ domain-like 4.07e-23
Family PDZ domain 0.0000183
Further Details:      
 
Domain Number 2 Region: 319-348
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000000218
Family LIM domain 0.00076
Further Details:      
 
Domain Number 3 Region: 288-318
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00000000166
Family LIM domain 0.0014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_014995046.1.72884
Sequence length 364
Comment PREDICTED: PDZ and LIM domain protein 3 isoform X1 [Macaca mulatta]; AA=GCF_000772875.2; RF=representative genome; TAX=9544; STAX=9544; NAME=Macaca mulatta; AL=Chromosome; RT=Major
Sequence
MPQTVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESM
THADAQDRIKAAAHQLCLKVDRAETHLWSPQVSEDGKAHPFKINLESEPQDVNYFEHKHN
IRPKPFIIPGRSSGCSTPSGIDCGSGRSTPSSVSTVSTICPGDLKVAAKLAPNIPLEMEL
PGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSEPTASVPPESDVYRMLHDN
RNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCGSG
IVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTL
YPKA
Download sequence
Identical sequences A0A1D5RF04 A0A2K5U1J5 A0A2K6E902
ENSMMUP00000020210 9544.ENSMMUP00000020210 XP_005556497.1.63531 XP_011713878.1.29376 XP_014995046.1.72884 ENSMMUP00000020210

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]