SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_015235545.1.42780 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_015235545.1.42780
Domain Number 1 Region: 174-278,447-560
Classification Level Classification E-value
Superfamily SET domain 3.27e-18
Family RuBisCo LSMT catalytic domain 0.065
Further Details:      
 
Domain Number 2 Region: 68-138
Classification Level Classification E-value
Superfamily TPR-like 0.0000000000813
Family Tetratricopeptide repeat (TPR) 0.0072
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_015235545.1.42780
Sequence length 699
Comment PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Cyprinodon variegatus]; AA=GCF_000732505.1; RF=representative genome; TAX=28743; STAX=28743; NAME=Cyprinodon variegatus; AL=Scaffold; RT=Major
Sequence
MMDLPCTQWQDHVAQKWSGLDPKQKETFNSLREIDDVFKCALSLANQEDLDAVQLISAGY
LAKKDSREASKCRERGNCSFKAKDYKAAALHYSQGICFAPPSSEQLSLCYANRSAALYHL
QHYQTCLDDINRALNNGYPPHLSYKLQDRRTLCLSRLSVCEKTIKDPLSASANDDICSQD
VLMSSNGAHRFGICPKVSVGCSEEKGCHLVALKKITAGEVILSDRPFSLVLIPGTEKVKG
KKEREQGTQREMVLGTEHRRCHRCLAETLCPVACEGCSLSQYCSAACQQEAWEEHHQWEC
PLGADLTVMGLMAQLALRITLKARIKNIQIARRTIRDEQKMKEKYNPYLTVFHLLHHLEH
QSAALRFLFAVTVATLYLKLSKAAPLPIPWKLNEASSASGGSTDAGDTESSPELWVVGSA
VLRHMLQLRCNAQAVITLQEAGSQNSQVQSVEEIRIATAMFPTLSLLNHSCCPNTSLVFG
TGKAADPCVSQESAGFNHRLLGEGRLDRGVTVTVRAARVITPGEQVLHCYGPHSNRMRTR
ERQHLLQQQYFFLCECEACSIQEDQRKSSRKDSGLLCSKCKGALIREGGSGFTCSSLTCG
HQVSAADVNERLQEVRAALEKAVELMERDVPVEALHHLQRTRSQSGFILGEIHPLQGELA
DATARAYAAMGDWRNAATQLEQSTVATASQYGKDSLEWC
Download sequence
Identical sequences XP_015235545.1.42780

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]