SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_015357518.1.40921 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_015357518.1.40921
Domain Number 1 Region: 169-231
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 1.96e-25
Family KRAB domain (Kruppel-associated box) 0.0013
Further Details:      
 
Domain Number 2 Region: 399-455
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.07e-22
Family Classic zinc finger, C2H2 0.0051
Further Details:      
 
Domain Number 3 Region: 860-916
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.16e-21
Family Classic zinc finger, C2H2 0.0066
Further Details:      
 
Domain Number 4 Region: 747-804
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.28e-20
Family Classic zinc finger, C2H2 0.0077
Further Details:      
 
Domain Number 5 Region: 455-511
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.33e-20
Family Classic zinc finger, C2H2 0.011
Further Details:      
 
Domain Number 6 Region: 901-953
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.78e-18
Family Classic zinc finger, C2H2 0.0045
Further Details:      
 
Domain Number 7 Region: 804-860
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.14e-18
Family Classic zinc finger, C2H2 0.012
Further Details:      
 
Domain Number 8 Region: 363-412
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000108
Family Classic zinc finger, C2H2 0.0041
Further Details:      
 
Domain Number 9 Region: 710-761
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000143
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_015357518.1.40921
Sequence length 1028
Comment PREDICTED: zinc finger protein 316 [Marmota marmota marmota]; AA=GCF_001458135.1; RF=representative genome; TAX=9994; STAX=9993; NAME=Marmota marmota marmota; AL=Scaffold; RT=Major
Sequence
MLKTGLREDLLPGKMAALHTTPDSPATQLERVEDGSQCDFDQEEEEEEEKGKEVEEEEEE
EIVVEEEEEEDMAEVVEEEQVQEVAEVEVEAELEEEDDDDNDTEEVMAEEQSPGLGTPEC
LSHGGDAKSPVLQEEALQASQVTAQDEDLEEEEEEEEEEEEDEDDFLTAGSQGLVTFEDV
AVYFSLEEWERLDADQRSLYQEVMQENYGILVSLGYPIPKPDLIFHLEQGEEPWVPDSPH
PEEGDIVTGVYTGAWFWNDDIEDHEEEDDEDFLAEMAEEENEPPGLWSAAYGVGDVPGTW
GPDDSDSAQTPEEWGPDPGSLGVLAEECEAKPFLPGREPGANLLAPWSFSTAVAAPTGRP
ETTCDVCGKVFPHRSRLAKHQRYHAAVKPFGCDECGKGFVYRSHLAIHQRTHTGEKPFPC
PDCGKRFVYKSHLVTHRRIHTGERPYRCAFCGAGFGRRSYLVTHQRTHTGERPYPCPHCG
RSFSQSSALARHQAVHTADRPHCCPDCGQAFRLRADFQRHRRGGGCTEPSGDGPRQESSE
VAVTVGPEEQEAGPEEPEEPEAVETDGDPESEAREEVAATAEAPAPESKKDPEPDRRFLE
MGNGLGEGEGPSSHPLGFHFPVHPKSWLHPDGFPILGLPNFGERLPADGRPLQGPLGTPL
SLVEGTGLACDPFGGGSAGGGGGGLRTFGPAVGGLLAEPAPAALAEEESPWICSDCGKTF
GRRAALAKHQRYHAGERPHRCADCGKSFVYGSHLARHRRTHTGERPFPCPECGARFARGS
HLAAHVRGHTGEKPFVCGVCGAGFSRGAHLTAHGRAHTGERPYACGECGRCFGQSAALTG
HQWAHAEEKPHRCPDCGKGFGHSSDFKRHRRTHTGEKPFRCADCGRGFAQRSNLAKHRRG
HTGERPFPCPECGKRFSQRSVLVTHQHTHTGERPYACANCGRRFSQSSHLLTHMKRHRDA
TGAPGQAAAAAPAPKAEAPTKGLLSANASSGSGERSSTLLEFAGGTSFGSEPATAFAGPS
GTYEESIM
Download sequence
Identical sequences XP_015357518.1.40921

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]