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Domain assignment for XP_015850917.1.50099 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_015850917.1.50099
Domain Number 1 Region: 105-185,215-566
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 5.62e-84
Family Integrin alpha N-terminal domain 0.00000000000239
Further Details:      
 
Domain Number 2 Region: 859-1087
Classification Level Classification E-value
Superfamily Integrin domains 2.72e-50
Family Integrin domains 0.00052
Further Details:      
 
Domain Number 3 Region: 720-851
Classification Level Classification E-value
Superfamily Integrin domains 4.39e-34
Family Integrin domains 0.000094
Further Details:      
 
Domain Number 4 Region: 568-719
Classification Level Classification E-value
Superfamily Integrin domains 4.87e-34
Family Integrin domains 0.00015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_015850917.1.50099
Sequence length 1124
Comment PREDICTED: integrin alpha-IIb isoform X2 [Peromyscus maniculatus bairdii]; AA=GCF_000500345.1; RF=representative genome; TAX=230844; STAX=10042; NAME=Peromyscus maniculatus bairdii; AL=Scaffold; RT=Major
Sequence
MAFSTKIHPQSGPSPFLVILQTMPVRGYCPPPCLLLSSYFGFQFDKPKLPVVGTLGKRKE
LTHSCLGGLGRRMARASCTWHALWLLQWTPLFLGPSPAPPAWALNLDPVTLTIYAGPNGS
HFGFSVDFHKDNHGSVSIVVGAPRALSASQEETGGVFLCPWKASGGECTSLAFELSESPA
WKGKGEPGGSGWRGSRNPPFLCPPGDETRHVGLQSLQTFRTGQGLGASVVSWNDVIVACA
PWQHWNVLEKNDEAEKTPVGGCFVAQLQNGGRAEYSPCRTNIMSSAYAEIYGPDKRYCEA
GFSSAVTQDGELVLGAPGGYYFLGLLVRVPIANIISSYQPGTLLWHVPNQRFTFDSGSSV
YFDGYREYVFGAPTWSWTLGAVEILDSYYQKLHRLLGEQVASYFGHSVAVTDVNGDGRHD
LLVGAPLYMDHRADRKLAEVGRVYLFLQPQGPYVLGTPTLLLTGTQLYGRFGSAIAPLGD
LNRDGYNDVAVAAPYGGPSGQGQVLVFLGQSEGLSPRPSQVLDSPFPTGSGFGFSLRGTV
DVDDNGYPDLIVGAYGASKVAVYRAQAVVMATVQLLVQDSLNPTVKNCVLEQTQTPVSCF
NIQMCVGATGHNIPQKLQLKAELQLDLNKPRQARRVLLLASQQASLTLSLDLGGKNRTIC
HTTTAFLRDEADFRDKLSPIVLSLNVSLPPGETGVAPALVLHGETYVQEQTRIILDCGED
DLCVPQLQLTATVGDSPLLIGAENVLELKIDAANEGEGAYEAELAVHLPPGAHYMQALSN
IEGFERLTCTQKKENETRVTLCELGNPMKKDTRIGITMLVSVENLEEAGQYVSFQLQIRS
KNSQNPNSQALLLPVAVQAEATVELRGNSIPASLVVAAEEDDREQSGLDSWIPRVEHTYE
LHNNGPGAVNGLRLVIHFPSQSQPSDLLYILDVQPQGGLLCSSQPTPKPLELDWTLRTPS
PSPIRPVHHNHHKRERRQAFLQGPKPLGQQDPVLVSCNDSAPCTVVECELQEMVRGQRAM
VTVRAMLALPSLRQRPLDQFVLQSHAWFNVSSLPYSVPVLSLPSGQALVQTLLLRALEDR
AIPIWWVLVGVLGGLLLLTLLVLAMWKAGFFKRNRPPLEEDDQE
Download sequence
Identical sequences XP_015850917.1.50099

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