SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for XP_016050842.1.11023 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_016050842.1.11023
Domain Number 1 Region: 55-168
Classification Level Classification E-value
Superfamily Spermadhesin, CUB domain 2.88e-28
Family Spermadhesin, CUB domain 0.00063
Further Details:      
 
Domain Number 2 Region: 263-377
Classification Level Classification E-value
Superfamily Spermadhesin, CUB domain 0.00000000000034
Family Spermadhesin, CUB domain 0.0036
Further Details:      
 
Domain Number 3 Region: 466-503
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000484
Family LDL receptor-like module 0.00085
Further Details:      
 
Domain Number 4 Region: 176-213
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000497
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 5 Region: 220-261
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000982
Family LDL receptor-like module 0.0013
Further Details:      
 
Domain Number 6 Region: 427-464
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000249
Family LDL receptor-like module 0.0028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_016050842.1.11023
Sequence length 772
Comment PREDICTED: low-density lipoprotein receptor-related protein 3 isoform X1 [Erinaceus europaeus]; AA=GCF_000296755.1; RF=representative genome; TAX=9365; STAX=9365; NAME=Erinaceus europaeus; AL=Scaffold; RT=Major
Sequence
MEKRAVAGLEGAPGARAQLAVVCLVNIVLTGRLSSAVPALGEASISQSPLPTAACSGKLE
QHTERRGVIYSPSWPLNYPPGTNCSWYIQGDRGDMITISFHNFDVEESHQCSLDWLMLGP
AAPPRQEALRLCGSAIPAAFISARDHVWIFFHSDASSSGQAQGFRLSYIRGKLGQVSCQA
DEFRCDNGKCLPGSWQCNTVDECGDGSDEGNCSAPVSEPPHSLCPGGTFPCSGARSTRCL
PAERRCDGSQDCGDGSDEAGCPDLACGRRLGSFYGSFASPDLFGAARGPSDLHCTWLVDT
QDPRRVLLQLELRLGYDDYVQVYEGLGERGDRLLQTLSYRSNHRPVSLEAAQGRLTVAYH
ARARSAGHGFNATYQVKGYCLPWEQPCGSGGDVEAGDPGEQGCFSEPQRCDGWWHCASGR
DEQGCPACPPDQYPCEGGSGLCYAPADRCNNQKSCPDGADEKNCFSCQPGTFHCGTNLCI
FETWRCDGQEDCQDGSDEHGCLAAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQ
EYRAFETQMTRLEAEFVRREAPPSYGQLIAQGLIPPVEDFPVYSASQASVLQNLRTAMRR
QMRRHASRRGPSRRRLGRLWNRLFHRPRAPRGQIPLLTAAHTSQTVLGDGLLQPVPGGAP
DTPAPQTDTNSSGTAPGHVPEVGPSGLPASGQRDPQGQQGNKDRKVCRAPRGASPAPVDT
ACTAQDPHSPTPAASGTPGPQPPEPVAVCRSPPPPSSPTLEASDDDEALLVC
Download sequence
Identical sequences A0A1S3WX11
XP_016050842.1.11023

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