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Domain assignment for XP_017173899.1.92730 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_017173899.1.92730
Domain Number 1 Region: 491-671
Classification Level Classification E-value
Superfamily Concanavalin A-like lectins/glucanases 3.64e-47
Family SPRY domain 0.0013
Further Details:      
 
Domain Number 2 Region: 165-230
Classification Level Classification E-value
Superfamily B-box zinc-binding domain 1.83e-17
Family B-box zinc-binding domain 0.0000332
Further Details:      
 
Domain Number 3 Region: 2-88
Classification Level Classification E-value
Superfamily RING/U-box 0.00000000000000116
Family RING finger domain, C3HC4 0.019
Further Details:      
 
Domain Number 4 Region: 372-496
Classification Level Classification E-value
Superfamily Fibronectin type III 0.0000000000000222
Family Fibronectin type III 0.0026
Further Details:      
 
Weak hits

Sequence:  XP_017173899.1.92730
Domain Number - Region: 109-161
Classification Level Classification E-value
Superfamily RING/U-box 0.0009
Family ZZ domain 0.042
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_017173899.1.92730
Sequence length 680
Comment PREDICTED: E3 ubiquitin-protein ligase Midline-1 isoform X1 [Mus musculus]; AA=GCF_000001635.25; RF=reference genome; TAX=10090; STAX=10090; NAME=Mus musculus; AL=Chromosome; RT=Patch
Sequence
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCR
HVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQ
FCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHED
EKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRNTELETL
LAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQIIGTKIKEGKVIRLRKLAQQIA
NCKQCLERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLIPEINLNDTFD
TFALDFSREKKLLECLDYLTAPNPPAIREELCTASYDTITVHWTSEDEFSVVSYELQYTI
FTGQANVVNVACDGTCLLGSAGLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFTVKAIN
QAGSRSSEPGKLKTNSQPFRLDPKSAHRKLKVSHDNLTVERDESSSKKSHAPERFAGQGS
YGVAGNVFIDSGRHYWEVVTSGSTWYAIGLAYRSAPKHEWIGKNAASWALCRCHNHWAVR
HDGKETPIAPAPHLRRVGVLLDYDNGSIAFYDALSSVHLHTFHAALAQPVCPTFTVWNKC
LTIVTGLPIPDHLDCTEQRP
Download sequence
Identical sequences O70583
NP_034927.2.92730 XP_017173897.1.92730 XP_017173898.1.92730 XP_017173899.1.92730 ENSMUSP00000038765 ENSMUSP00000107732 ENSMUSP00000107733 ENSMUSP00000126746 ENSMUSP00000128176 ENSMUSP00000038765 10090.ENSMUSP00000107733 ENSMUSP00000038765

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