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Domain assignment for XP_017373931.1.71028 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_017373931.1.71028
Domain Number 1 Region: 49-137
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.28e-36
Family SCAN domain 0.0000795
Further Details:      
 
Domain Number 2 Region: 357-414
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.68e-26
Family Classic zinc finger, C2H2 0.0032
Further Details:      
 
Domain Number 3 Region: 403-455
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 9.1e-20
Family Classic zinc finger, C2H2 0.0032
Further Details:      
 
Domain Number 4 Region: 488-538
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.67e-18
Family Classic zinc finger, C2H2 0.0054
Further Details:      
 
Domain Number 5 Region: 319-371
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.86e-18
Family Classic zinc finger, C2H2 0.0052
Further Details:      
 
Domain Number 6 Region: 216-264
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 0.0000000589
Family KRAB domain (Kruppel-associated box) 0.0059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) XP_017373931.1.71028
Sequence length 546
Comment PREDICTED: zinc finger protein with KRAB and SCAN domains 4 [Cebus capucinus imitator]; AA=GCF_001604975.1; RF=representative genome; TAX=1737458; STAX=9516; NAME=Cebus capucinus imitator; AL=Scaffold; RT=Major
Sequence
MAREPRKNAALDAQSAADKTGLLTVKVEKEDASALTVELSAPGSPAGGPEHLRQRFRGFR
LPAAAGPREALSRLRELCRQWLQPEMHSKEQILELLVLEQFLTILPGNVQSWVREQHPES
GEEVVLLLEYLERRRDEPAPQVPVGDQGQELHCCNTALLTQTQRSQSSQCQPMKALFKRE
SLGSQPLQDRVLQVPGLAQGGHCREDAMVASKLTPGSQELLKMEDEALTLSPGWTQLDSS
QVNLYRDEKQENHSSLVSLGGEIQTKSRDLPPAEELPEKEHGKISCCLSEDIAQIPTCAE
AGEQEGRLQRKQKNAIGSRRHYCHECGKSFAQSSGLTKHRRIHTGEKPYECEDCGKTFIG
SSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKAFSQSCSL
LEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNSQNPEHGMPWEGQSRTESHWE
NVEAPVSYKCNECERSFTQNRSLIEHQKIHTGEKPYQCDTCGKGFTRTSYLVQHQRSHVG
KKILSQ
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Identical sequences A0A2K5R4E0
XP_017373931.1.71028

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