SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_017681401.1.3805 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_017681401.1.3805
Domain Number 1 Region: 194-210,316-373,1203-1412,1439-1480,1514-1607
Classification Level Classification E-value
Superfamily ARM repeat 0.0000000336
Family Plakophilin 1 helical region 0.08
Further Details:      
 
Domain Number 2 Region: 673-794
Classification Level Classification E-value
Superfamily Sec7 domain 0.0000196
Family Sec7 domain 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_017681401.1.3805
Sequence length 2175
Comment PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 3 isoform X4 [Lepidothrix coronata]; AA=GCF_001604755.1; RF=representative genome; TAX=321398; STAX=321398; NAME=Lepidothrix coronata; AL=Scaffold; RT=Major
Sequence
MEEILRKLQKEASGSKHRAIKESCTWAIETLDSPDAAIKIPPYQLREKCLLPLQLALESK
SMKLAQQALAGMQKLLSDERFVSVETDSDEKQLLNQMLNAVKVTPSLNEDLQVEVMKVLL
CITYTSTFELNGSSVLKIAEVCIETYVSSCHQRSINTAVRATLSQMLSDLTLQLRQKQEN
MTIETHDTLQKFKSQGTSVESLCDDVVSVLTVLCEKLQAVINDNRQLQLLYLECILSMLN
SFSPSMHQHKGFTDLIWKQLCPALVVILGNPIHDKTITSAHSSICLEADSPSSGISDHGR
GSGCSSTAPALSGPVARTIYYIAAELVRLMGSVESMKPVLQSLYHRILLYPPPQHRVEAI
KIMKEILGSPRQLCDLAGPCSSESESKKRSISKRKSHLDLLKLIMDGMTEACIKGGIEAC
YASVSCVFALLGALDELSQGRGLSEEQIQLLLQRLEELKDGTETSRDSMEINDADFRWQR
RILSSENPAWESGNEKSPDISISVTTDTGQTTLEGDMGQTTPEDNPESQKNSLPSPAGHE
SKEIHYREPESETIDQPDVVQRSHTIVYPDITNFLSVDCKTRSYGSRYSESNFSVDDQDL
SRTEFDSCDQYSMAAEKDSGRSDVSDIGSDNCSLADEEQTPRDCPGHRSLRTAALSLKLL
KSQEADQHSARLFIQSLEALLPRLIALPSVEEVDEALQSFSSTFCSGMMHSPGFEGTLNF
NFQTLMNADSLYVVSHYTLLLNLKLANSDYYRKKPAQAPVLLKEFMKQVQSSGVLMVFSQ
AWIEELYHQVLERNMLGEAGYWGSPEEHSLPLISMLTDIDGLGSSAIGGQLMASASAQSP
LSQNQKTDDSVVAGVAFARYLLIGCWKNLIDTLSTPLTGRMAGSSKGLAFILGAEGAKEQ
NQKEKDSICMSLDGLRRAARLSCALGVAANCASALAQMAAASCVQEEKEEKEIQEPSDTI
AQVKQKVEQKLEQMGKMQGVCLHTAHVLCMDAVLNVGLEMGSHNQDCWPHVFRVCEYIST
LEHTHFSDGASQPSLTITQSQQAPGGLHPASEPGDSPQAFTPEQETTLSSHPVIQPVSIQ
DLIKDNSKGRAFEFRGGSLLCGTSAAKAVLTLSTQADRLFEDAADKLNLTALAGFLYQLK
KASQAQLFHSVTDTVDYSLAMPGEVKSTQDRRSALHLFRLGDAMLRIVRSKSRPLLHLMR
CWSLVAPHLVEAACHKERHVSRKAVSFIHDILTEVLMDWNEPSHFHFNEALFRPFERIMQ
LELCDEDVQDQVVTSIGELVEMCSTQIQSGWRPLFSALETVHSSNKSEVKEYLVGEYSMG
KRQAPVFDVFEAFLNTDSIQVFANAATSYIMCLMKFVKGLGEVDCKEVGDCMPGSGSAST
DLCLPALDYLRRCSQLLAKIYKMPLKPIFLSGRLVNLPRKAQEQSASSEDGIECILSDFD
DDTGLINVWIILLEELTTAISNCPRQHQPPTLDLLFELLRDVAKTPGPGFGIYAVVHLLL
PTMSLWLHRSHGDHSYWDVASANFKHAIGLSCELVVEHIQNFIHSDIGYENMINTMLKDL
FKLLVACVAEPTEIISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSATLEPVKNL
LGYFHSGSESFSGDACEVKVAAPSLSPSAEAEYWRIRAMAQQVFMLETQCSPKTPSNKEG
FEHAQSCVLIIDLPPDKKPNGHSQRRKLGIPFRTIVVSLLSHQVLLQNLYDILLEEFVKG
PSNLEEKMTIQVPENKLAGFLRYISMQNLAVIFDLLLDSYRTAREFDTRPGLKCLLKKVS
GISGAANLYRQSAMSFNIYFHALVCAILTNQENITAEQVKKILFEDDERSTDSSQQCSSE
DEDIFEETAQVSPPRGKEKRQWRARIPSLSVQPVSNADWGWLIKRLHKLCMELCNNYIQM
HLDLENNVEEPPVFKGDSFFILPSFYSETSTPSTGGLSGKDTPSEDDRSQIRDQLGDSLT
PRGGSGEMLLLPPPLSPKPEKKEQTKKKEWWESAGNKIYTIATDKTISKRKQQQAMTSFT
KEIKVEKKGELLGSRGPDSPVLQRPQHLIDQGQMRHSFSAGPEILRQEKRPRSGSTVSSL
NISVRDAEAQIQAWTNMVLTVLNQIQALPDQTFTALQPAVFPCISQLTCHVTDIRVRQAV
REWLGRVGRVYDIII
Download sequence
Identical sequences XP_017681401.1.3805

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]