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Domain assignment for XP_019235007.1.74238 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_019235007.1.74238
Domain Number 1 Region: 115-197
Classification Level Classification E-value
Superfamily BRCT domain 2.36e-21
Family DNA-repair protein XRCC1 0.07
Further Details:      
 
Domain Number 2 Region: 1093-1180
Classification Level Classification E-value
Superfamily BRCT domain 1.45e-16
Family BRCT domain 0.016
Further Details:      
 
Domain Number 3 Region: 12-98
Classification Level Classification E-value
Superfamily BRCT domain 0.00000000000432
Family DNA topoisomerase II binding protein 1, TopBP1 0.03
Further Details:      
 
Domain Number 4 Region: 1325-1392
Classification Level Classification E-value
Superfamily FYVE/PHD zinc finger 0.0000000000115
Family PHD domain 0.0058
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_019235007.1.74238
Sequence length 1411
Comment PREDICTED: BRCT domain-containing protein At4g02110-like isoform X1 [Nicotiana attenuata]; AA=GCF_001879085.1; RF=representative genome; TAX=49451; STAX=49451; NAME=Nicotiana attenuata; strain=UT; AL=Chromosome; RT=Major
Sequence
MTEGNQDMLYEDGSKIFIGVRFVLVGSDPLRKWQIRSKLLEGGAVDVSGYGPDCTHLIVD
SIVYDDPICLAARQDGKIIVTSLWVEHSYDMGMALDHHSIMYIPPRDLNGIPGAKSLVVC
LTGYPGHDRDDIMKMVGLMGANFSKPLVANKVTHLICYKFEGDKYELAKKTKTIKFVNHH
WLEDCLRSWEILPEDDYDKSGYELMMMEAEAKDSEEENEGIAANRRGEEIAIMGPDHSKS
PNQFLVKQEASTNISDLRTFRGLSGLGNTKELSLSASKQSKSHQVPAFEESPNRHAKMLN
TNLCRTKEELPSSIEQNGSDFVFVSSSARKSPHSCSSREIPRKFNLPMTSEQIKTYAGSP
ATAEAGTEFDFLNLSSEKDQEKSELGAKTSKNLSFPGKGQSSRLPEKRPLGISDSSFQSS
RTSNNPESIQDGYLTANRTEQLVHTSKLHSPRKIGCHLSSRNTAPHYDKGVTLHTYHDST
ISNPVTLSTQRGCDEDEPQSGTSRIMDSKGISHATVDVNGPLDELYDVPSSITERRDTLK
SNVLAGFDKAGDDSVSGSKPLRKRLLSKKTPTSDVNGPLDELHDVPSPVNERRDTLKSNV
LAEFNKAGDDSMSGSKPMKKRSLSKKTLGSRQSFRKGGDRNQKGSLSISKTTLMSDSAAS
SSGGREETEHQNNLSSTNGEVLPANNADSSKENERNIFLNSEKGTAKTNESINDDTEAPE
DQDDEELNGLKEKSTDTEAQRSRLRSMEKKLNENKVVNQDDMKDTDVAKRQSTENNKSET
QKILSDKKTKLSESTSVGKVSVEKVSSGPNYLMKNSKKTNLATKIALVSKEGAEGKKCRT
DGKKADAKKAKGSPSEKGEVLPADLSKEIERNKILDSEKETAKTTESINDDTEAPEDQED
EELNVLREKSSVTEVQHSRLRSMEKRLNVNKVVNQNDMKDTDIAKTQSIENNTSDTPKTL
SGKKTKLSESTSVGKASEEKVSKGPKHLMKNSKKTNLATKRVAVSTEGAERKKCRTDKAN
AKKGKGPPSETGKTTVIATEHQYERSMDVEKENIPDIGDQNASHNKHGADRSSPYDKKLC
SLQVTEVQSEPRWFIVSGHRLQRKEFQQVIKRLKGKVCRDSHQWSYQATHFIVPAPLRRT
EKFFAAASSGRWILKTDYLTACVEAGKFLDEEPYEWHNKGLTEDLAINLEAPRKWRLLRE
RTGHGALYGMRIIIYGDYIVPPLDTLKRAVKAGDGIILATSPPYSRFLESGVDFAIVSDV
MPRCDKWVQEFLRHEIPCVLPDYLVTYVCKPGYPLNNYVQYNTHAWAERALKKHVNRLEE
IVEEMVPSNDNKNDLACQVCGLPDREEVMLICGDESGSHGCGIGMHVDCCDPPLECVPEE
DWFCPECTKTRSNTSIKRKSKKGTSTSKRKK
Download sequence
Identical sequences A0A1J6JJ54
XP_019235007.1.74238

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