SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_020300139.1.29359 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  XP_020300139.1.29359
Domain Number 1 Region: 569-761
Classification Level Classification E-value
Superfamily Sec7 domain 3.66e-72
Family Sec7 domain 0.00000289
Further Details:      
 
Domain Number 2 Region: 79-107,141-159,333-513,1062-1412
Classification Level Classification E-value
Superfamily ARM repeat 1.48e-26
Family Plakophilin 1 helical region 0.08
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) XP_020300139.1.29359
Sequence length 1696
Comment brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Pseudomyrmex gracilis]; AA=GCF_002006095.1; RF=representative genome; TAX=219809; STAX=219809; NAME=Pseudomyrmex gracilis; AL=Scaffold; RT=Major
Sequence
MMQNNSKTREMFIVRALEKILADRDVKRSHLSQLRKSCESALEDLRNEIKDVPAVQGEEV
TSNALPQPKSDSNVITAEKYFLPFELACQSKSPRIVVTALDCLQKLIAYGHLTGNVPDST
EPNKLLIVRIVETICGCFTGPQTDEGVQLQIIKALLTVMTSQHVEVHEGTVLLTIRTVYN
VYLASRNLVNQTTARATLTQMINVIFARMETQAEEENMRIEGEQQQETAVVTNGETETDL
STENTSISNDTVDSQTIVKGILDDVMNSVVPLEEEVSLENGNTEDNGDEAAAENDNMVTA
KFTHVLQKDAFLVFRALCKLSMKPLPDGTPDPRSHELRSKILSLQLLLGILQNAGPVLRS
NEMFVIAIKQYLCVALSKNGVSSVPEVFELSLALFLALLARFKMHLKMQIEVFFKEIFMN
ILETSSSSFEHKWMVIHALTRICADAQSVVDIYVNYDCDLSAANLFERLVNDLSKIAQGR
QALELGASPNQEKSMRIRGLECLVSILKCMVEWSRDLYVNPSVPADQQPISDPPDPAPET
PLPRYGSAGSLSSANSSLTGNKEVPDSPEQYEVQKQQKEVWETGIEIFSRKPGKGVQYLQ
EQGLLGTSPEDVARWLHLDERLDKTAIGDFLGDHNHNQVMYHYIDQMNFADRDLVTALRY
FLEGFRLPGEAQKIDRLMEKFASRYCECNPNNGLFTSADTAYVLGFSIIMLTTDLHSPQV
KNKMTKEQYIRLNRRISDNEDLPEEYLSRIYDEIAGNEIKMKSNPNNNRLAGKQLISSEK
KRRLLWNMEMEVISTAAKNLMESVSHVQAPFTTAKHLEHVRPMFKMAWTSFLAAFSVGLQ
DCDDPEIASLCLDGIRCAIRIACIFHMTLERDAYVQALARFTLLTANSPITEMKAKNIDT
IKTLITVAHTDGNYLGSSWLDVVKCISQLELAQLIGTGVRPQLLGPPSKPHFPLPLANFG
NLTHSINLHQTNNLNLSSLDPSVKESIGETSSQSVVVAVDRIFTGSTRLDGDAIVEFVKA
LCQVSLEELAHPTQPRMFSLTKIVEISYYNMGRIRLQWSRIWQVLGDHFDRVGCSPRQDI
AFFAVDSLRQLATKFIEKGEFANFRFQKDFLRPFEHIMKKNRSPVIRDMVVRCVAQIVHS
QAPNIRSGWKNIFSVFHHAASDRDESVVELAFCMTGKIINELYAENFSIMVDSFQDAVKC
LSEFACNASFPDTSMEAIRLIRSCASYIDANPSLFAEGMMDESGMVSEEDRAWVRGWFPL
LFELSCVVSRCKLDVRTRALTVLFDVVKTHGASFKPHWWKDLFQVLFRIFDNMKLPEQHT
EKAEWMTTTCNHALYAIVDVFSQFYDILGPLLLEQLYSQLLWCVQQDNEQLARSGTNCLE
NLVISNGIKFDEQTWEKTCQCVLDIFESTLPSALLTWKPQSPNKESDLDVITGESDGHHV
GILKRSNSVQSLSTESLPKAKLFSALQIKCVVQLELIQTIDNIVFYPATSRKEDQENLAL
AQADMLNGKTSELVKAGADQQKEEQGMYCALTTNHLLQLVECLLRSHRFAKSFNSDHEQR
NVLWKAGFRGNVKPNLLKQETQSLACALRILFKMYSDEAHRADWPKVETRLVEVACEALE
YFLAIANEAHRDAWTPILLLVLTRILKMSDHRFAVHASTCYPSLCEVMCFDLKPELRSVL
RRFFLRIGPVFRITQQ
Download sequence
Identical sequences XP_020300138.1.29359 XP_020300139.1.29359 XP_020300140.1.29359

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]