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Domain assignment for XP_020953016.1.46622 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  XP_020953016.1.46622
Domain Number 1 Region: 36-129
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 7.78e-36
Family SCAN domain 0.00000734
Further Details:      
 
Domain Number 2 Region: 639-695
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.32e-24
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 3 Region: 369-426
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 5.53e-23
Family Classic zinc finger, C2H2 0.0064
Further Details:      
 
Domain Number 4 Region: 582-639
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.13e-22
Family Classic zinc finger, C2H2 0.0066
Further Details:      
 
Domain Number 5 Region: 527-583
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.59e-22
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 
Domain Number 6 Region: 680-732
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 8.81e-18
Family Classic zinc finger, C2H2 0.014
Further Details:      
 
Domain Number 7 Region: 411-463
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.13e-17
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 8 Region: 489-540
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000000107
Family Classic zinc finger, C2H2 0.0045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_020953016.1.46622
Sequence length 739
Comment myeloid zinc finger 1 isoform X6 [Sus scrofa]; AA=GCF_000003025.6; RF=representative genome; TAX=9823; STAX=9823; NAME=Sus scrofa; breed=Duroc; AL=Chromosome; RT=Major
Sequence
MRPAALGSPGHAPPEDEGPVTVKLEDSEEEGEAAPWDPGPEAARRHFRHFRYEEAVGPCE
ALARLRELCRQWLRPEVHSKEQMLELLVLEQFLGVLPPEIQARVQRQQPGSPEEAAALVE
GLRREPGGPRRWVTVQVQGQEVLSEKVEPSDFQPLPQTTPPTPDPGLEMPPRATPESLLG
LRVKEEPEVTEDPELLDSGTLPKPQEATSTFLPKEAQGPLWFQGCDMAPDQASPQSETGP
EGPSWREHPRALWQEEAGRIFSPGFTLRMGSVSVGQGTVSPHLHIPWDLGMASLTGQLES
PSCEGGLSQAVVLRSDPGGEQDPRDDPCQGAGRGLAAARWCAPRGRGRGRPSTGTGAVRG
GRCDVCGKVFSQRSNLLRHQKIHTGERPFVCGECGRSFSRSSHLLRHQLTHTEERPFVCG
DCGQGFARSARLEEHRRVHTGEQPFHCSECGQRFRQRSNLLQHQRIHGDPPGPGAAPPAP
PGAPEPPGPFPCSECRESFARRAVLLEHQAVHTGDKSFGCVECGERFGRRSVLLQHRRVH
SGERPFACAECGQSFRQRSNLTQHRRIHTGERPFSCAECGKAFRQRPTLTQHLRVHTGEK
PFACPECGQRFSQRLKLTRHQRTHTGEKPYHCGECGLGFTQVSRLTEHQRIHTGERPFTC
PECGQSFRQHANLTQHRRIHTGERPYSCPECGKAFRQRPTLTQHLRTHRREKPFACQDCG
RRFHQSTKLIQHQRVHSAE
Download sequence
Identical sequences XP_020953012.1.46622 XP_020953013.1.46622 XP_020953014.1.46622 XP_020953015.1.46622 XP_020953016.1.46622 XP_020953017.1.46622

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