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Domain assignment for gi|17229088|ref|NP_485636.1| from Nostoc sp. PCC 7120

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|17229088|ref|NP_485636.1|
Domain Number 1 Region: 3-344,1006-1254
Classification Level Classification E-value
Superfamily beta and beta-prime subunits of DNA dependent RNA-polymerase 1.42e-199
Family RNA-polymerase beta-prime 0.000000056
Further Details:      
 
Weak hits

Sequence:  gi|17229088|ref|NP_485636.1|
Domain Number - Region: 463-651
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.0534
Family Pectate lyase-like 0.089
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|17229088|ref|NP_485636.1|
Sequence length 1350
Comment DNA-directed RNA polymerase subunit beta' [Nostoc sp. PCC 7120]
Sequence
MIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDDLMVPP
SKRSLLEAAEEEIRATEVRYQRGEITEVERFQKVIDTWNGTSEALKDEVVTHFKQTNPLN
SVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPMTEGSKTLIKLSTRLL
GRVVGEDVIHPKTKEVIAPRNTPISDDLAKEIEKAGVAEVVVRSPLTCEAARSVCQHCYG
WSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKMDGTIKLP
RKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIHVTQGSTIYIVDGQQVKK
GQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTDRQGNTTTTAARGGLI
WILSGEVYNLPPGAELVVKNGDRVETNGVLAETKLTTIHGGVVRLPEATPGKSTREIEII
TASVVLDQATVTVQSSQGRNNYLITTGNNQVFNLRATPGTKVQNGQVVAELIDDRYRTTT
GGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQYVEAGTEV
VKDIFCQNSGVVEVTQKNDILREVVVKPGELLMVDDPEAVIGRDNTLLQPGEELLGQVAT
ELRYIQYVESPEGPALLSRPVVEFAVPSNPDVPSTTSVSQQTGRSIQMRAVQRLPYKDSE
RVKSVEGVELLRTQLVLEIEQEGEQEHNASPLAADIELIPDLEDADVQRLQLVILESLVL
RRDIAADATQGSTQTSLEVKDGDTIVPGSVVARTQILSKEGGIVRGVQKGSEAVRRCLVL
RHSDMATLNISAKPKVKAGDLIVAGTELAPGIFAEESGQIVGVKNAGESTTTQDAALSTQ
NYAVTIRAGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEA
RKPKEACILAKRGGEVKVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAG
QPLSDGPSNPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKH
IEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKA
SLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYDEPGML
EDYSTLETTSVLDETDDPLDMVLDDRTARAYNLDSPGLAETGFNNRRSILDDDELIADEI
HDLVEAEVEVDDEVDDDYEDDDEDDDDYED
Download sequence
Identical sequences 103690.alr1596 gi|17229088|ref|NP_485636.1|

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