SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSORLP00000017243 from Oryzias latipes 69_1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSORLP00000017243
Domain Number 1 Region: 36-62,109-384
Classification Level Classification E-value
Superfamily WD40 repeat-like 9.16e-61
Family WD40-repeat 0.00018
Further Details:      
 
Domain Number 2 Region: 380-424
Classification Level Classification E-value
Superfamily SOCS box-like 0.00000000144
Family SOCS box-like 0.0037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSORLP00000017243   Gene: ENSORLG00000013748   Transcript: ENSORLT00000017244
Sequence length 427
Comment pep:known chromosome:MEDAKA1:13:26803640:26823019:1 gene:ENSORLG00000013748 transcript:ENSORLT00000017244 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MASFPDTVNEKDLGQAKFIGELLVPTAPFDQKSGREAWSVAFSPNGSYFAWSQGHRIVRL
IPWTKCLKSFSMNHGDEETVALNPWNLSRHNSDRSQTITVDDDPREHTLDCGDIVWSLAF
GSSVPEKESRCVNIEWHHFKFGQNHLLLATGLNNGRIKIWDVYTGKLLLNLMDHTDVVRD
LTFAPDGSLMLVSASRDKSLRVWDLKDDGNMVKVLRGHQNWVYSSAFSPDSSILCSVGAG
KAVFLWNMDKYTLIQKLEGHHNDVVSCEFSPDGALLATASYDTRVIVWDHHNATILLELG
HLFPPPSPIFAGGANDRWVRSVSFSPDGRHIASITDDRLIRFWSIEEKAPQAIAFLSNGL
CCSFSTDGKVLAAGTRDGSVHFWECPRSIASLQHVCRMALRRIMTTQQVEALAIPTPLQD
YLTYRMV
Download sequence
Identical sequences H2MF72
8090.ENSORLP00000017243 ENSORLP00000017243 XP_004075916.1.28442 ENSORLP00000017243

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]