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Domain assignment for jgi|Sorbi1|5050605|Sb02g003900 from Sorghum bicolor

Domain architecture


Domain assignment details

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Strong hits

Sequence:  jgi|Sorbi1|5050605|Sb02g003900
Domain Number 1 Region: 406-578
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 6.58e-47
Family Ribonuclease PH domain 1-like 0.0000335
Further Details:      
 
Domain Number 2 Region: 77-213
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 3.9e-40
Family Ribonuclease PH domain 1-like 0.0000532
Further Details:      
 
Domain Number 3 Region: 217-300
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 2.88e-23
Family Ribonuclease PH domain 2-like 0.0014
Further Details:      
 
Domain Number 4 Region: 560-663
Classification Level Classification E-value
Superfamily Ribonuclease PH domain 2-like 5.5e-22
Family Ribonuclease PH domain 2-like 0.0002
Further Details:      
 
Domain Number 5 Region: 731-812
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.31e-16
Family Cold shock DNA-binding domain-like 0.0018
Further Details:      
 
Domain Number 6 Region: 672-758
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000000000308
Family Eukaryotic type KH-domain (KH-domain type I) 0.0031
Further Details:      
 
Domain Number 7 Region: 296-356,397-435
Classification Level Classification E-value
Superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.00000000366
Family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.0093
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) jgi|Sorbi1|5050605|Sb02g003900
Sequence length 877
Sequence
MLACPAALHLLLPAPPPPSHQHQHHHVAFPAPPLHASLPCSRRARRRAPRPRHGVARASA
AVAEEASSSGPAKFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCLADTPN
DPADFFPLSVHYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPKGFYYET
QILSWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRIGLIDDQFVVNPTTEQME
NSELDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQSCGKKKM
VDAISLPPPELYRHVEDISGDELVKALQIKGKIPRRKALSALEDKVISILSEQGYVSKDA
SSGVTESLADIVEDEDEDEIIVDGEVDEGDFPIKPLFAEVDVKLVFKEVSSKYLRRRIVE
GGRRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDT
EDSKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVEST
ITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLILSDITGA
EDASGDMDLKIAGNESGISAFQMDIKVVGITLPVMEQALFQARDGRQHILNEMSKSSPPP
SKALSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVKITARDLS
SLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSGWLAKA
EDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDADSESNSGSTKEKAPQKDDAIKMTSRR
PRRKRQSEPFGAENATIKTLEKSAAAPAGSKGSEVGK
Download sequence
Identical sequences 4558.Sb02g003900.1 jgi|Sorbi1|5050605|Sb02g003900

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