SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSOCUP00000017165 from Oryctolagus cuniculus 76_2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSOCUP00000017165
Domain Number 1 Region: 86-200
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000000000729
Family V set domains (antibody variable domain-like) 0.016
Further Details:      
 
Domain Number 2 Region: 170-295
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000000296
Family C1 set domains (antibody constant domain-like) 0.031
Further Details:      
 
Domain Number 3 Region: 301-384
Classification Level Classification E-value
Superfamily Immunoglobulin 0.0000000015
Family I set domains 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOCUP00000017165   Gene: ENSOCUG00000026280   Transcript: ENSOCUT00000024577
Sequence length 468
Comment pep:known scaffold:OryCun2.0:GL018881:514244:523576:1 gene:ENSOCUG00000026280 transcript:ENSOCUT00000024577 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MFMRSRKYGNCRKYGNKSYNTGPLAGFRVQPRHPACPLPCLDPTSLPAPWRREAAVCRCK
PRWSRAPPLTLSHLSPLPPAPAATVQAPAWIQGFLGDTVTLPCYLPLEADMRVTQVTWMR
QEPAGGARNVAVFHSTRGASVSEPGRLEFVAARPGAELWNASLAVSGLRAEDEANYTCQF
ATFPQGSRSARTWLRVLAQPQNMVEPREVLLAQQPREPEETVAVARCVSTGGRPPGQITW
FSHLNGTASESQEPGPQPGTTTVISLFALVPSSQADGQNITCRVEHESQREPALLPVTLP
CAVNPPEVSISGYDDNWYLGRSKAALTCDVRSNPEPTGYNWSTTTGPLPPSAVAQGRQLQ
ITKVDESVNTTFICLVTNSLGTGRGELPVLVREARPGEQPGSGMSVTNTVLVLVFGGVLG
FILLGILLYLRRRCSRSRTDHSSASANGAVSYRSVASEDSSPQTDTRR
Download sequence
Identical sequences G1TJN6
ENSOCUP00000017165

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]