SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSORLP00000004323 from Oryzias latipes 76_1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSORLP00000004323
Domain Number 1 Region: 197-211,241-317
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.0000000000000576
Family Splicing factor U2AF subunits 0.013
Further Details:      
 
Weak hits

Sequence:  ENSORLP00000004323
Domain Number - Region: 310-338
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.00072
Family CCCH zinc finger 0.0047
Further Details:      
 
Domain Number - Region: 174-193
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.0222
Family CCCH zinc finger 0.0063
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSORLP00000004323   Gene: ENSORLG00000003476   Transcript: ENSORLT00000004324
Sequence length 588
Comment pep:known_by_projection chromosome:MEDAKA1:3:12411826:12415654:1 gene:ENSORLG00000003476 transcript:ENSORLT00000004324 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAASIPGPISAPILSQKQRKAAQRKERRRRKRQAVAQARESDVQGEAEEECTVDEENGED
TGLTEEERLQLHKEWLERERLAQEEFRLRVEREETARKKKEEEERMIKEEWEAQQKREQE
EKEQKLQERRDREEAVQKMLDEAENQLEHKGPWMNPEAPVNMNFENYGTERDVANCPFFL
KTGACRFGERCRCSRKHVYPTSSPTLMIRGMFMTFGMEQLRRDDYDMDACLEHSEEDLHE
SFLEFYHDVLPEFKSVGKVVQFKVCCNYEPHLKGNVYIQFETDDQCKEALMKFNGRWYAG
RQLQCEISPVTRWKNAICGLFDRRKCPKGKHCNFLHVFRNPGNEFWEADRDLHLSPNRNP
QSSRRDGWYSERSRERSSRYSRYSRSPVRSERSRSRRESDRHRSRSREVRSPHRDKGSAR
SRHSDKGADRYRSRSRERRKRSRSRDRGSKYRDNSEEGDCGDEEPHTEARAKLRSTSRER
KRKKRSRDRSSKKPDKSKKSTADENTPSFQKRSKKRKKSKKKHKRKSPKSDSSAESNTEN
QSDEEAADHPSAQSSSEDVNETETTQEKSVENDLNSETKLESELARNG
Download sequence
Identical sequences H2LEF3
ENSORLP00000004323 ENSORLP00000004323 8090.ENSORLP00000004323

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]