SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSORLP00000018720 from Oryzias latipes 76_1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSORLP00000018720
Domain Number 1 Region: 8-101
Classification Level Classification E-value
Superfamily PDZ domain-like 2.4e-18
Family PDZ domain 0.00083
Further Details:      
 
Weak hits

Sequence:  ENSORLP00000018720
Domain Number - Region: 218-271
Classification Level Classification E-value
Superfamily EF-hand 0.00238
Family Calmodulin-like 0.043
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSORLP00000018720   Gene: ENSORLG00000014934   Transcript: ENSORLT00000018721
Sequence length 502
Comment pep:known_by_projection chromosome:MEDAKA1:19:23000775:23017267:1 gene:ENSORLG00000014934 transcript:ENSORLT00000018721 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
VNMGPHPPSGLLSLSSDSIIQLICVAKGTGLGLVIRGGANRAEGPMVFIQEIVNGGDCQK
DGRLQVGDQLVSINKESLIGVTYEEARSILTRTKLRPDPTVEIAFIRRRSSSSSSSGSHS
PICQQGESGGGKAPGLFTMPPQLPTVAKITSSRNPHCETLPAVNVTQVRVSPARTEQACV
SLASRSDGVAVTTPVFLPSDTPASLPLQRKSSLSATCRLKLERLEQALDLIGLKPTEVQR
QTLMSRLQADPAGTVAFTEFDSLIRELFKPQLEELINTQPGRVSVQLMLSDSVDLEEMEK
LRKEHIEALKDIKRLQEQLLQSQRTQEDLEEDLKKAKQDVKVGAEESRALRTRIQQAEEA
QKQARGMEMDYEEVIHLLEAEIAELKTQRMEHPASTKKEEQTEELKKRVTVLESQLRKSE
AARKGFEMSTGKLLSFVETVQEFLLESHGPPKSYRRRYRVSSGDIKVAPLSHPRRSPWTA
ATLAQEARELTRSVRAFLEVDC
Download sequence
Identical sequences H2MJ80
8090.ENSORLP00000018720 ENSORLP00000018720 ENSORLP00000018720

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]