SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSMODP00000039260 from Monodelphis domestica 76_5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSMODP00000039260
Domain Number 1 Region: 106-373
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.89e-77
Family Reverse transcriptase 0.00000114
Further Details:      
 
Domain Number 2 Region: 2-57
Classification Level Classification E-value
Superfamily Acid proteases 0.00000259
Family Retroviral protease (retropepsin) 0.008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSMODP00000039260   Gene: ENSMODG00000028946   Transcript: ENSMODT00000042370
Sequence length 373
Comment pep:novel chromosome:BROADO5:3:283885978:283887193:1 gene:ENSMODG00000028946 transcript:ENSMODT00000042370 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGVSGITQRVKRLPPRMVSVGPLEVQHSFLLMPDSPLNLLGRDLLCKLRATITCSPDGSL
SLEVPEESLNLLPVLLSENQEAKEPSIFEIPKDIPESLWATSSSDVGLLKSAVPVQIKTK
SSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIPCKSEYNTPILPIKKPKKGPDGKHIY
RFVQDLRAVNNHVIKRHSVVSNIHTIISSIPSTATYFTVVDLCSAFFSIPIHENSRHIFA
FTWKGSQYTWCRLPQGYVESPSLFEQILSQDTDNITFKNSKLIKYVDDLLLASTDAETCQ
EDSKHLLLELHKRGHKISKDKVQWCLQKVEYLGFILTAGARYISPKRIENIQKLSAPTTK
KQLRAILGATGFC
Download sequence
Identical sequences K7E0F9
ENSMODP00000039260 ENSMODP00000039260

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]