SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSMODP00000041073 from Monodelphis domestica 76_5

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSMODP00000041073
Domain Number 1 Region: 106-531
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 6.78e-115
Family Reverse transcriptase 0.0000000131
Further Details:      
 
Domain Number 2 Region: 845-1004
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.81e-40
Family Retroviral integrase, catalytic domain 0.0014
Further Details:      
 
Domain Number 3 Region: 585-727
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.13e-26
Family Ribonuclease H 0.0033
Further Details:      
 
Domain Number 4 Region: 2-57
Classification Level Classification E-value
Superfamily Acid proteases 0.0000124
Family Retroviral protease (retropepsin) 0.008
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSMODP00000041073   Gene: ENSMODG00000028385   Transcript: ENSMODT00000044183
Sequence length 1116
Comment pep:novel chromosome:BROADO5:5:195798338:195802202:1 gene:ENSMODG00000028385 transcript:ENSMODT00000044183 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGVSGITQRVKRLPPRMVSVGPLEVQHSFLLMPDSPLNLLGRDLLCKLRATITCSPDGSL
SLEVPEESLKLLPVLLSENQDAKEPSIFEIPKDIPESLWATSSSDVGLLKSAVPVQIKTK
SSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIPCKSEYNTPILPIKKPKKGPDGKHIY
RFIQDLRAVNNHVIKRHSVVSNIHTIISSIPSTATYFTVVDLCSAFFSIPIHENSRHIFA
FTWKGSQYTWCRLPQGYVESPSLFEQILSQDTDNITFKNSKLIKYVDDLLLASTDAKTCQ
EDSKHLLLELHKRGHKISKDKVQWCLPKVEYLGFILTAGARSISPKRIENIQKLSAPTTK
KQLRAILGATGFCRQWIPCYGEITKPLIALTRDAVPEPLKLEPEHLSALSELKKAILSAP
ALGIPDYNKPFTLYVHERRGVASGVLTQTLGPSQRPIAYYSAQLDPVAAGAPPCLRGVAA
TALLVTKTVDLVLGCPLTIMCPHEIEALLVKHRTQAFSDQRIIRYEITLLNNENITLKRC
STLNPATLLPDLPTSGEPLHNCETLVSMAEKPRDNLLDTPLDNADLILFTDGSSFMRDGI
RYTGAAVVSEFATEWSASLPSNISAQGAELIALKHACIIAKDKKATIYTDSRYAFGICHS
VGMLWLQRGFLTSAGKSIANAEIINEVLYALKLPKALAVVHCSAHTGGSDPVSRGNDRAD
AAAKLAAIEGPGLILTLTTTDNLNLSLSYNEKEVEKWKQKFKAKQINGVWVSSEGKPLLP
RSFYHQICQSVHNNGHFGTQGIVDSVKRVWIAPGITTIASKVCSSCPTCQAYNQHAFRGK
AFGGRPLAYTPFEHLQIDFITMPKAGQYKFCLVIVDQLTRWPEAFPTARATAAFVAKVLL
KEIIPRFGLPARIDSDRGSHFTDSVLNQIYSCLGITPKFHVPYHPQSSGQVERMNKELKT
MIGKLCTETHLKWPEILPLALFYLRSRPRGDLHISPFEMLFGHPPIQAKPFSPAYTSLLG
GDITIASYIQELQHKLRELHESGAAVQAGPLDFSLHDLNPGDKVYIKNFQRTGATQPSWE
GPFQILLTTPTSIKVGEKDSWIHCSHVKRASSVETD
Download sequence
Identical sequences K7E5M1
ENSMODP00000041073 ENSMODP00000041073

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]