SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSOPRP00000000960 from Ochotona princeps 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSOPRP00000000960
Domain Number 1 Region: 193-305
Classification Level Classification E-value
Superfamily Spermadhesin, CUB domain 6.93e-17
Family Spermadhesin, CUB domain 0.0047
Further Details:      
 
Domain Number 2 Region: 400-437
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000262
Family LDL receptor-like module 0.00081
Further Details:      
 
Domain Number 3 Region: 147-177
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000105
Family LDL receptor-like module 0.0026
Further Details:      
 
Domain Number 4 Region: 330-355
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000772
Family LDL receptor-like module 0.0029
Further Details:      
 
Weak hits

Sequence:  ENSOPRP00000000960
Domain Number - Region: 358-399
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00406
Family LDL receptor-like module 0.0031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOPRP00000000960   Gene: ENSOPRG00000001050   Transcript: ENSOPRT00000001045
Sequence length 715
Comment pep:known_by_projection genescaffold:pika:GeneScaffold_1890:329767:334141:1 gene:ENSOPRG00000001050 transcript:ENSOPRT00000001045 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MLPATFLFLLLLPGGALAHLDGIIFPNRACEDSPVLLSEVQGILQRPLSRDSRNFPAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCLNHRCVPAVQRCDGIDACGDGSDEAGCSSDP
YPGLTPAPAPVLPCNLTLEDFYGVFNSPGYSHPASISHPQSCLWLLDPHDGRRLAVRFTA
LDLGFGDSVHVYDGAGPPEPPRLLRSLTHFSNGKAVTVETLSGQAVVAYHTVAWSGGRGF
NATYHVRGYCLPWDRPCGLGSGLWASEGLGERCYSEAQRCDGSWDCADGTDEENCPGCPP
GHYPCGAASTPGATACYLPADRCNYQTFCADGADERRCRHCQPGNFRCRDEKCVYETWVC
DGQPDCADGSDEWDCSYALPRKVITAAIIGSLVCGLLLVIALGCTCKLYAIRTQEYSIFA
PLSRMEAEIVQQQAPPSYGQLIAQGAIPPVEDFATENPNDXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTRAAETRTQGASSTVTPESLESSAGA
AREGGAVGGQDGEQAPPLPVKAPLPSANTSPAPRPMAEAPEPMPSGPLEPALLSGVVQAL
RGRFLPGLRPPGPTWPPPGSHTAVLAPEDEDDVLLVPLAEPGVWVVEAEDEPLLA
Download sequence
Identical sequences ENSOPRP00000000960 ENSOPRP00000000960

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]