SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Ochotona princeps 76 > ENSOPRP00000002706

Domain assignment for ENSOPRP00000002706 from Ochotona princeps 76

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ENSOPRP00000002706
Domain Number 1 Region: 1796-1884
Classification Level Classification E-value
Superfamily Fibronectin type III 5.87e-18
Family Fibronectin type III 0.0008
Further Details:      
 
Domain Number 2 Region: 1707-1796
Classification Level Classification E-value
Superfamily Fibronectin type III 9.68e-18
Family Fibronectin type III 0.0000279
Further Details:      
 
Domain Number 3 Region: 713-878
Classification Level Classification E-value
Superfamily Fibronectin type III 1.67e-17
Family Fibronectin type III 0.0000157
Further Details:      
 
Domain Number 4 Region: 623-709
Classification Level Classification E-value
Superfamily Fibronectin type III 1.1e-16
Family Fibronectin type III 0.0008
Further Details:      
 
Domain Number 5 Region: 1620-1707
Classification Level Classification E-value
Superfamily Fibronectin type III 0.00000000000000584
Family Fibronectin type III 0.0014
Further Details:      
 
Domain Number 6 Region: 1531-1616
Classification Level Classification E-value
Superfamily Fibronectin type III 0.0000000000347
Family Fibronectin type III 0.0029
Further Details:      
 
Domain Number 7 Region: 1872-1926
Classification Level Classification E-value
Superfamily Fibronectin type III 0.000000193
Family Fibronectin type III 0.0024
Further Details:      
 
Weak hits

Sequence:  ENSOPRP00000002706
Domain Number - Region: 410-435
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000156
Family EGF-type module 0.079
Further Details:      
 
Domain Number - Region: 504-527
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000782
Family EGF-type module 0.054
Further Details:      
 
Domain Number - Region: 473-496
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00112
Family Integrin beta EGF-like domains 0.032
Further Details:      
 
Domain Number - Region: 597-620
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0014
Family EGF-type module 0.074
Further Details:      
 
Domain Number - Region: 349-372
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00195
Family EGF-type module 0.034
Further Details:      
 
Domain Number - Region: 224-248
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00257
Family EGF-type module 0.026
Further Details:      
 
Domain Number - Region: 257-280
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00424
Family EGF-type module 0.045
Further Details:      
 
Domain Number - Region: 380-403
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00503
Family EGF-type module 0.026
Further Details:      
 
Domain Number - Region: 535-558
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00559
Family EGF-type module 0.034
Further Details:      
 
Domain Number - Region: 318-341
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00559
Family EGF-type module 0.043
Further Details:      
 
Domain Number - Region: 286-310
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00559
Family EGF-type module 0.022
Further Details:      
 
Domain Number - Region: 192-216
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00559
Family EGF-type module 0.049
Further Details:      
 
Domain Number - Region: 442-465
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0101
Family EGF-type module 0.04
Further Details:      
 
Domain Number - Region: 566-589
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0223
Family EGF-type module 0.036
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOPRP00000002706   Gene: ENSOPRG00000002917   Transcript: ENSOPRT00000002937
Sequence length 1928
Comment pep:novel genescaffold:pika:GeneScaffold_5320:1037:57668:-1 gene:ENSOPRG00000002917 transcript:ENSOPRT00000002937 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MGAVTWLFPGIFLALFVLSTEGGVLKRIIRHKRQSGVNVTLPENHPVVFNHVYNIKLPMG
SQCSVDLESASGEKDLAPPPEPSESFQEHTVNGENQIVFTHRINIPRRACGCAAAPDVKE
LLNRLEELESLVSSLREQCTMGVGCCPQAAEGRLDTRPFCSGRGNFSTEGCGCICEPGWK
GPNCSEPECPNNCHLQGQCLDGQCVCDEGFTGEDCSQLACPSDCNDQGRCVNGVCICFEG
YTGTDCSQEICPVPCSKEHGTCIDGRCVCQDGFAGEDCNEPLCLNNCYNRGRCVENECVC
NEGFTGEDCSELICPNDCFDRGRCVNGTCYCEDGFTGEDCGKLTCPNDCHNQGRCEEGQC
VCDDGFAGADCSEKRCPADCHHHGRCLNGQCECDDGFTGADCGELQCPNSCSGRGRCVNG
QCVCDEGYTGEDCSQQRCPSDCHNRGRCVQGKCICELGFKGYDCSDMSCPNDCHQHGRCV
NGMCVCDDDYTGEDCRDRRCPRDCSHRGRCVEGQCVCEDGFTGPDCAELSCLNDCHGQGR
CVNGQCVCYESFMGKDCKERRCPNDCHGQGHCEDGHCICHEGFTGVDCGQRSCPRDCSNL
GQCVSGRCICNEGYTGEDCSEVSPPKDLIVTEVTEETVNLAWDNEMRVTEYLIMYTPTEA
DGLEMQFRVPGDQTSTTIQELEPGVEYFIRVFAILENKRSVPVSARVATYLPAPEGLRFK
SVKETSVEVEWDPLDIAFETWEIIFRNMNKEDEEEITKSLRRPETSYRQTGLAPGQDYEI
SLHIVKNNTRGPGLKRVTTTRLDAPSQIEVKDVTDTTALVTWFKPLAEIDNIELSYGVKG
VPGDQTVIELTHDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTTXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXALPLLENLTISDINPYGFTVSWMASENAFDSFLV
TVVDSGKLLDPQEFTLSGTQRKLELRGLITGIGYEVVLSGFTQGHQTKPLLAEVVTEAEP
EVDNLLVSDATPDGFRLSWTADEGMFDSFVLKIRDTKKQSEPLEIILPAPERTRDITGLR
EATEYEIELYGISNGRRSQPVSAIATTAMGSPKEIIFSDITENAATVSWLSPTAQVEGFR
ITYVPITGGPPSTVTVDGSKTQARLQKLIPGMEYIVNIIATKGFEESEPLSGSLITALDG
PSNLVTANVTDSEALAIWQPAIATVDSYVISYTGERGPEITHTVSGNTVEYALTGLKPAT
EYTLRVFAEKGPRKSSPITTKFTTDLDSPRDLAATEIQSETALLTWRPPRASVTGYLLVY
ESVDGKVK
Download sequence
Identical sequences ENSOPRP00000002706 ENSOPRP00000002706

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.