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Domain assignment for ENSOPRP00000016088 from Ochotona princeps 76

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSOPRP00000016088
Domain Number 1 Region: 269-434
Classification Level Classification E-value
Superfamily Neurotransmitter-gated ion-channel transmembrane pore 1.57e-30
Family Neurotransmitter-gated ion-channel transmembrane pore 0.0043
Further Details:      
 
Domain Number 2 Region: 177-203,230-277
Classification Level Classification E-value
Superfamily Nicotinic receptor ligand binding domain-like 0.000000654
Family Nicotinic receptor ligand binding domain-like 0.032
Further Details:      
 
Domain Number 3 Region: 67-108
Classification Level Classification E-value
Superfamily Nicotinic receptor ligand binding domain-like 0.00000353
Family Nicotinic receptor ligand binding domain-like 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSOPRP00000016088   Gene: ENSOPRG00000018507   Transcript: ENSOPRT00000018685
Sequence length 437
Comment pep:novel genescaffold:pika:GeneScaffold_492:616623:672449:-1 gene:ENSOPRG00000018507 transcript:ENSOPRT00000018685 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MRLDFQLVLFTCTWITVMPKAHTASDTRTPQPQCPSSRKHIRREDTRMWRDDSTKAWPPK
QQQLLHINDHDFAIRPGFGGSPVAVGIDVQVESIDSISEVNMDFTMTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITV
SAMCFMDFTRFPLDTQNCSLELESCKSYFLTDSKFDFRFFTSQGHFGILSNAYSEEDLML
YWKHGNKSLNTEDHISLSQFFIEEFSASSGLAFYSSTAGSAKVSLGITTVLTMSTIMTGV
SASMPQVSYIKAVDVYLWVSSLFVFLSVIEYAAVNYLTTVEERKQFKKKGKIDDDNDDEC
FFPSIFILFPGMELXXXXXXXXPTAQEWTIFTKKVILENNHVIDTYCRILYPIVYIIFNL
LYWGVYFQVRFYFINES
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Identical sequences ENSOPRP00000016088 ENSOPRP00000016088

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