SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for LOC_Os02g06584.4|13102.m00729|protein from Oryza sativa ssp. japonica 5.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  LOC_Os02g06584.4|13102.m00729|protein
Domain Number 1 Region: 9-40
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.000053
Family CCCH zinc finger 0.0027
Further Details:      
 
Weak hits

Sequence:  LOC_Os02g06584.4|13102.m00729|protein
Domain Number - Region: 150-239
Classification Level Classification E-value
Superfamily Myosin rod fragments 0.0157
Family Myosin rod fragments 0.007
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os02g06584.4|13102.m00729|protein
Sequence length 295
Comment zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Sequence
MLGPPRRGPAYKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAG
DFRGRIDRRFSPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTDD
GETNSSRSLSLSDNNDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEK
IDEVRKISSKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLG
DLLASDILKRGANEEGSSVNEDLNERSPNTAATKKRSIPYSTSEEAKAEEKRARL
Download sequence
Identical sequences LOC_Os02g06584.4|PACid:21923768 LOC_Os02g06584.4|13102.m00729|protein

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]